Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02120 ATGACTATCATCAACGAAGACCAACAACAAAATCAAATACCTGGCCACAAACAACTCCATCATAAGAGTCTCCTTCAGAGTGATGCACTCTATCAGTATATACTTGAAACCAGCGTGTACCCAAGAGAACACGAGAGCTTGAAGGAGCTTCGCGAGTTGACGGAAAAACACCCTTGGAACCTCTTAGCTACACCACCTGACGAAGGACAACTTCTGAGTATGCTACTGAAGGTCGTCAATGCGAAGAACACCATGGAGATTGGCGTCTACACTGGTTACTCCTTGCTTTCCACTGCCCTCGCTCTTCCATCTGATGGAAAGATCTTGGCAATGGATATCAACAGGGAATATTATGAACTGGGGTTGCCTGTGATTGAAAAAGCAGGAGTGGCTCACAAGATTGACTTCAGAGAAGGGCCAGCACTTCCTCTTCTTGATCAACTCATCAAAGACGAAAAGAACAAGGGAAGCTTCGATTTCATCTTCGTTGATGCTGATAAAGATAACTACTTGAACTATCATAATAGGGTGATTGAGCTTGTGAAGGTCGGGGGAATGATCGCCTACGATAACACCCTGTGGAACGGCTCTGTGGTCGCCCCACCCGATGCTCCTCTCTTGGATTATATTAAATATTATCGTGATTTTGTGATGGAGCTGAATCAGGCACTTGCACTTGATTCAAGGGTCGAGATTTGCCAGCTTCCCGTTGGTGACGGCATTACCCTGTGCCGCCGCATCATTTGA 747 0.4605 MTIINEDQQQNQIPGHKQLHHKSLLQSDALYQYILETSVYPREHESLKELRELTEKHPWNLLATPPDEGQLLSMLLKVVNAKNTMEIGVYTGYSLLSTALALPSDGKILAMDINREYYELGLPVIEKAGVAHKIDFREGPALPLLDQLIKDEKNKGSFDFIFVDADKDNYLNYHNRVIELVKVGGMIAYDNTLWNGSVVAPPDAPLLDYIKYYRDFVMELNQALALDSRVEICQLPVGDGITLCRRII 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02120 248 Gene3D Vaccinia Virus protein VP39 13 248 IPR029063 -
Viun2g02120 248 Pfam O-methyltransferase 36 247 IPR002935 GO:0008171
Viun2g02120 248 CDD AdoMet_MTases 86 185 - -
Viun2g02120 248 FunFam Caffeoyl-CoA O-methyltransferase 1 16 248 - -
Viun2g02120 248 PANTHER O-METHYLTRANSFERASE-RELATED 18 247 - -
Viun2g02120 248 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 23 247 IPR002935 GO:0008171
Viun2g02120 248 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 27 246 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02120 Viun-Chr2 29330206 29331690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02120 6 247 Monolignol Biosynthesis Gene Families AT4G34050 77.273 1.18e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02120 K00588 - gmx:100799303 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02120 2 29330206 29331690 Viun3g03836 3 45693319 45694825 ECH
Viun2g02120 2 29330206 29331690 Viun2g02120 2 29330206 29331690 ECH
Viun2g02120 2 29330206 29331690 Viun3g03836 3 45693319 45694825 PCT