Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02119 ATGGGCGACATGTACCACTTTGACAAGAATCTCTCTTCGCAGGACGAAATCTCACTTTTTCTTCGTCAGATTCTCCTCCGTTCATCTCCTTCTTCTTCTTCTTCACCCCACTCCGTCCCCGGATCCTGCAACTCCAACGTCTCTCACCAAAACGTCAATTCTCACGCTTCTTTCTCGCCCTCGCACCTCCAACACGCCAAGATCTCCAACCTTGGTTCCACCGCCTCTTTTCTCTCCGCTTCTGCCACTTCCGCTTCCTTCAAGCCCCACCCTGCTTCTGCGCCAAATGTGTCTTCTTCTTCCCTTTTAGTCAGCGAGAACGAGAATGATGACTATGATTGTGAAAGTGAGGAGGGTGTCGAAGCTTTGGCCGAAGAACTTCCGACAAAGCCCGTTCCTTCAAGGAGTTCATCTAAGAGATCAAGAGCTGCAGAAGTTCATAATTTGTCTGAGAAGCGAAGAAGGAGTAGAATCAACGAGAAAATGAAGGCCTTGCAAAATCTAATTCCGAATTCTAACAAGACGGACAAGGCTTCAATGCTCGATGAAGCTATTGAATACCTTAAACAACTTCAGCTGCAAGTACAGATGCTGTCAATGAGAAATGGGTTGACTTTGCATCCTATGTGCTTTCCAGAAGGCTTACAAGCAGTGCAGTTGTCTGAGATGGGCATGGAACTAAGTGAAAGAAACAGGTCTACCCCTTTAAACATAACAGCTACTCTGCCTCTCCACCAAGAGAACAACCCCTTGCACTACACATCCAATCTACAAAGCAAACACATTCTGCCAAATCAGCCATCTGCACCATATCCTTCATTTATTAACAACCCAGAAACTTCTTTTGGGCTGGAATCCCGAATCCAACCAGAAACAAAACCTCTTCAACACAAAGGAGGATCGTCTGGGCCAATACGAGGAGAAGACATTTTGCATTACCAGCAACCAAGTGCTATCCATTCAGATGCTAATAATACATTAGGTGGTTCTCAAGTGGTGAAAGAATTCGAGTCAGGCACAACAGTATCACTCTCTTTTGACACGCAAACATGTGAACCATGCATTGGCGCGAGAGATCAGTCAGGAGTGATCATAAGAAATAGTGAGGCCAACATTGTTGTTACATCGCAGTTAAGTAGGTAA 1143 0.4541 MGDMYHFDKNLSSQDEISLFLRQILLRSSPSSSSSPHSVPGSCNSNVSHQNVNSHASFSPSHLQHAKISNLGSTASFLSASATSASFKPHPASAPNVSSSSLLVSENENDDYDCESEEGVEALAEELPTKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLTLHPMCFPEGLQAVQLSEMGMELSERNRSTPLNITATLPLHQENNPLHYTSNLQSKHILPNQPSAPYPSFINNPETSFGLESRIQPETKPLQHKGGSSGPIRGEDILHYQQPSAIHSDANNTLGGSQVVKEFESGTTVSLSFDTQTCEPCIGARDQSGVIIRNSEANIVVTSQLSR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02119 380 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 12 303 IPR031066 -
Viun2g02119 380 FunFam Basic helix-loop-helix transcription factor 137 200 - -
Viun2g02119 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Viun2g02119 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 203 IPR036638 GO:0046983
Viun2g02119 380 MobiDBLite consensus disorder prediction 31 60 - -
Viun2g02119 380 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Viun2g02119 380 MobiDBLite consensus disorder prediction 85 154 - -
Viun2g02119 380 MobiDBLite consensus disorder prediction 140 154 - -
Viun2g02119 380 SMART finulus 148 197 IPR011598 GO:0046983
Viun2g02119 380 CDD bHLH_AtPIF_like 143 205 IPR047265 -
Viun2g02119 380 Gene3D - 137 201 IPR036638 GO:0046983
Viun2g02119 380 Coils Coil 181 201 - -
Viun2g02119 380 MobiDBLite consensus disorder prediction 108 122 - -
Viun2g02119 380 MobiDBLite consensus disorder prediction 85 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02119 Viun-Chr2 29317292 29320606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02119 5 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 43.810 7.45e-49 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g02119 HLH 4.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02119 - - vum:124831111 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02119 2 29317292 29320606 Viun3g03831 3 45596147 45599003 PCT