Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02118 ATGCCCGACAGCGGCGCAATGAACGACCAGCTCTCCAACCCCACCTCCATCTTCGGCCTCCGTCTCTGGGTGGTGCTCGGCGTCTGTGTCGGCGCCGCCATCGTCCTCATCCTCTTCCTCATCTCCGTCTGGGTCGCCTTCAAGCGCTCCAAAGCCAACCCCGTTTCCATCCCCGACGTCTCCAAGGAGATCCAAGAAATAAGGGTCGACCACGCCCCCACCCCCAACCCGACCCACCAACCCGACCCTTTTCCCGAACCTGACCCACTTCCGCCCACCGACGAAGAATCCAACCCTCTCGGCTACCACAGAATCCAGTTCGAGATTGGGAAGAACCACCGAATCTCCTACCCCGAACGTGCCCTGCTTCGCTCTTCTTCCAACGACCCTGCCGGTGCTGAGCCTCGCCTCCTCGATCAGGTTCCCACCGTCATTCCCGAAGTTTCTCACTTGGGCTGGGGCCACTGGTACACTCTCCGGGAGCTTGAGGATTCCACCAACGCCTTCGCCCCTGAGAATGTTATTGGCGAAGGAGGTTATGGAATTGTTTATCATGGTATCTTGAACGACAATACTCATGTTGCCATCAAGAATTTGCTCAATAATAGGGGGCAAGCTGAGAAGGAGTTCAAGGTTGAAGTGGAAGCTATAGGACGGGTTCGCCACAAGAATTTAGTGAGGTTGCTTGGTTATTGTGCTGAAGGAGCTCATAGAATGCTTGTTTATGAGTACGTCGACAATGGTAACTTGGAGCAGTGGCTTCATGGGGATGTTGGGCCTTACAGTCCTCTAACATGGGAAATTCGGATGAACATTATTCTGGGAACTGCCAAAGGGCTAACTTATTTACATGAGGGTTTGGAACCAAAAGTTGTTCACCGTGATATTAAATCAAGCAACATTCTGCTCAGTAAGCAGTGGAATGCAAAGGTCTCAGACTTTGGCCTCGCCAAACTCCTTGGCTCTGACAACAGTTATATCACCACCCGTGTCATGGGTACTTTTGGATATGTTGCTCCTGAATATGCAAGTACTGGCATGTTGAATGAACGAAGTGATGTTTATAGTTTTGGAATTCTGATTATGGAAGTTCTTACAGGAAGGAACCCTGTTGATTATAGTCGGCCTCCAGAGGAGGTGAATTTGGTAGACTGGCTCAAGAAGATGGTCAGTAACAGGAATCCAGAGGGGGTGCTGGATCCGAAGCTTCCCGAGAAACCAACTTCAAGGGCACTAAAACGAGCCCTTCTTGTAGCCTTACGTTGCACTGATCCTAATGCACAGAAGCGACCTAAAATGGGGCATGTGATACACATGCTTGAAGCTGAAGATTCCCCTTACAAAGAGGATCGCAGAGCTAGAAGGGATGCAGGACAATCACCCAATGACAGAGTAGGTGATGGACTGAAAGAGGAAGCAGGTGTATCAGTTGATGATGGCAAGGTTGAAAATGGGATGGTTGTCAATGAGACAAGAACGAGCCCTCAAATAGAAAAGCAATAA 1503 0.5017 MPDSGAMNDQLSNPTSIFGLRLWVVLGVCVGAAIVLILFLISVWVAFKRSKANPVSIPDVSKEIQEIRVDHAPTPNPTHQPDPFPEPDPLPPTDEESNPLGYHRIQFEIGKNHRISYPERALLRSSSNDPAGAEPRLLDQVPTVIPEVSHLGWGHWYTLRELEDSTNAFAPENVIGEGGYGIVYHGILNDNTHVAIKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYVDNGNLEQWLHGDVGPYSPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLSKQWNAKVSDFGLAKLLGSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILIMEVLTGRNPVDYSRPPEEVNLVDWLKKMVSNRNPEGVLDPKLPEKPTSRALKRALLVALRCTDPNAQKRPKMGHVIHMLEAEDSPYKEDRRARRDAGQSPNDRVGDGLKEEAGVSVDDGKVENGMVVNETRTSPQIEKQ 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02118 500 SMART serkin_6 169 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02118 500 MobiDBLite consensus disorder prediction 76 94 - -
Viun2g02118 500 Gene3D Phosphorylase Kinase; domain 1 149 244 - -
Viun2g02118 500 CDD STKc_IRAK 175 441 - -
Viun2g02118 500 FunFam Probable serine/threonine-protein kinase At1g01540 149 244 - -
Viun2g02118 500 FunFam Putative receptor-like serine/threonine-protein kinase 245 455 - -
Viun2g02118 500 ProSitePatterns Protein kinases ATP-binding region signature. 175 197 IPR017441 GO:0005524
Viun2g02118 500 Pfam Protein kinase domain 172 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02118 500 ProSiteProfiles Protein kinase domain profile. 169 448 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02118 500 SUPERFAMILY Protein kinase-like (PK-like) 145 441 IPR011009 -
Viun2g02118 500 MobiDBLite consensus disorder prediction 71 97 - -
Viun2g02118 500 MobiDBLite consensus disorder prediction 440 500 - -
Viun2g02118 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Viun2g02118 500 MobiDBLite consensus disorder prediction 440 478 - -
Viun2g02118 500 Gene3D Transferase(Phosphotransferase) domain 1 245 457 - -
Viun2g02118 500 PANTHER OS01G0323000 PROTEIN 5 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02118 Viun-Chr2 29311736 29314555 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02118 13 436 Trihelix Transcription Factor Family AT1G68690 38.515 3.16e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Viun2g02118 Pkinase 2.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02118 - - gmx:100797726 902.123