Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02116 ATGGCGGACGAAGAGCCAGTAAGCGGGAGGCGAAGGCCGAGGGGACCGGAGTCCACCGCTCGCAGCGAAGCGTTGGAACGTCTCAAGGCCCGCCTCCGAGGTGGTCGTCGATCCGATGGCACTGGGCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACTGTCCCTGAGGACGAGTACAACGCACTCGTCGCCAAGCGCCGCGAGCAGGCGCGCTCCTTCATAGTCGACGATGAAGGAATCGGTTACGGCGATGAGGGCGAGGAAGAGGACTGGTCTCAGGCTGGATTCACTCTCTCCTCCGATGAATCCGAAGGCGAATCGGAGAGGCCAAAGCGGAAGAAGGTCGAGAAGAAGGATCCTCAGCCGAAACGGCCTTCTTCGTCGCTCTCCGCCGCTGCGGCCATGATGGGAGGGCAGAGGTTGTCCTCTATGTTCACTTCCTCCGTTTTCAAGAAGAGCAGAGACGACAAAGCCTGTGAGAGCATCGTCGACGATGTTATCGCGGAGTTCGCTGCGGACGAGACTGATAGACTGAGGCGTAGAAGGGCGCAAGGGAATTCCTCTTCCACTTCTGTTGCAAACAATGCTTTGCGTGTTAATAACACGGTTAGGGATAATAATTCTGTTGGTATGATGGGAGATTTTTCTTCATTGCCGGGAAATGGTAACGCTGAGTCTGTTAAGATAGTTGTTGAGAGTGATGGTTTTGACTCGGGGTTTGCGCCAAAGAGCGCAGTGGTTAGTGAAATCCAAGATTTCGGGCGCGATAATTCTGAGAATGGGCAGGGACCGGCCGTGGGAGCTGAGGATTCTCAAATTAATGAATGTATGATTGAGGAGGAAGAGGTGAAGAGTTTTGAAATTGAAGTGAAAGCGGATGCAAAGAAGGAGGTGTTCACTTTGAACGCGAAGGTAAAAGAAGCGGACGACCCTGCATTATCTGCGACTGCTGGTTGGAAGGAAGCAATACGCGATGCTGGCGGGGTTGATGTTTCTGATTCGAAGGATGCTTGGCAGAACCAACATTCAGAGTTTGATCTGGAGGAAGATGGGTCACTGCCTTTCTACATATTAGATGCCTACGAAGAGTTTTATGGGGAAAATAGGGGCACCCTTTATCTCTTTGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTTAAGGGCATGCAAAGGTGCGTCTATGCAGTTCCTACCCGACCTCTGCTTCGCACTGAAGAGATGACGAGTCTCGAGAGAGATGTCCGGGAGTCTCGAATTTCTTCTGCGGATTTCTTTAAAAAGCTGCAAGATGCTGCAGCTGATGTTAAGAATGAGGTAGCACAGCATCTGGTGAATTTGGATGTTTCGAACTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATTTGAAATCCCTGCAGGGGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGATCCTGTACTTCCAGTAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTGGTTGCAGTGCCCTTGAGCTTTTTCTGATTAAACGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAGGTTTGCTACGAGCTCATCTTCCCGAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGGCTCTCCTAAACTCATAAGGACATCACCTCCTTCGAAAATCACTTCTAATATTCCTCCGGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAGATTGTATCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGACGCGCCTATGATGGCTTCAGAATGGAGGAGACCTGGAAGGCTGACCCATTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCAATGGGATTCAACAAAGAGGTCACGGACAGAAACTTAAAAGCTGGTTCAAATATTCTGTGTGCTGAAAGCAGTGAGAGAGCTTTATTGAACCGCTTGATGTTAGAATTGCACAAGTTGGATAGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTCTCCACAGATGTCAGGCCTGCAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGACGCCTCAACCGATCGACTATGCCTAAACTTGGAAGAAGAAGTAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCATGCATTGCTGGCAGGCTTCTTTGTGATACATATTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAATCCGCGGAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTGATGTTTTATTTAAGTATTCTTCCACTCACACGTCAGCTAACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGAGTTGAATATCTTTTGCTGCATACTTTCCATGCAATGAAATATATGGTGCCAGACAAGTTCTCAAACTATTCTAAAGAAACGAAATTGACGAAACGTAGAGTAACTCATGATGTTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGATGCTTCTGAACCTAATAATAAGAAAAGCAAAAAGGGTCCTTCTTACGCCGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTCCTTTTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAGATCTTTGGACGGATCTTTTCCACGTCTACCATCTAGTAAAATAACTGGAGTCTTGCCAGAGGTGCTGAAAAATCTGGTAGATAGGAGGAAGAAGGTAAAGTCGTGGATAAAGAATGAAAAAAAGAAGAATGAAAAAGCTGATCCTTTAAGGGTTCAGCAACTGGATATTCAGCAGCAAGCACTTAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCCAGATTTTATGCTAAGCCTTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATTTAGTTCAGAATGCCTTGAATTTAGAGGTGATCTATGGTGACACCGATTCAATAATGATTTACAGTGGGCTAGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGCTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGTTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTTTTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATGAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTACGAAGACATTGACTAAACCACCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAGGGTTACTCTTCTGGCTGTTCTGTTGGTGATACAATCCCTTATATAATTTGTTATGAGCAGGGTGGCAGTTCAGGCAGTGCAGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACGGGAACAAGGGACATGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCAATTCAGGGGACAAGCCCAGAAAGACTGGCTGATTGCTTAGGGCTTGATTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTAATGATGATTCTAGCAGTTCACTCTTGTGTGCTGCTAATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTCTAAATCTATTTGCTGTTTGTTGGGAAGTGAAATGACAACCAGCGTATCTACCGAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCCCCGATGATGTCAAAATTTCTCCAGCGATGATAGCGAATCAGGTCAAAAGGCAAGCAGAGATGTTTGTTTTGATGTACTATAAAGGTTTACTAACGTGTGATGATGAAACGTGCAAGCATACAACGCGGAGTATCAGCCTGCGGTTGGTTGGTGATTCCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGTTGCAATGGCCGTCTGCTTAGAAAGTATACTGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACGCTGTTTCTTGTATAGAAAAGATGGAGGGCAAATCTAGAATAACTATAGAGAAAGAGGTGATGAAAATTAGGCCTATGATTGATCCAGCAGCTTCAACAGCGCAGAAGATCAGGGACCGTTGTGCTTATGGCTGGGTGAGACTGGAGGATCTGGTGATAACAGTTTAA 4635 0.441 MADEEPVSGRRRPRGPESTARSEALERLKARLRGGRRSDGTGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEGESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKACESIVDDVIAEFAADETDRLRRRRAQGNSSSTSVANNALRVNNTVRDNNSVGMMGDFSSLPGNGNAESVKIVVESDGFDSGFAPKSAVVSEIQDFGRDNSENGQGPAVGAEDSQINECMIEEEEVKSFEIEVKADAKKEVFTLNAKVKEADDPALSATAGWKEAIRDAGGVDVSDSKDAWQNQHSEFDLEEDGSLPFYILDAYEEFYGENRGTLYLFGKVKTGDLYQSCCVIVKGMQRCVYAVPTRPLLRTEEMTSLERDVRESRISSADFFKKLQDAAADVKNEVAQHLVNLDVSNFSMAPVKRKYAFDRFEIPAGENYVVKINYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGPSWLQVSRFATSSSSRRVSWCKFEVTVGSPKLIRTSPPSKITSNIPPVVVAAINLKTTINEKQNINEIVSASVVCCNMVKIDAPMMASEWRRPGRLTHFTVVRKLDGSIFPMGFNKEVTDRNLKAGSNILCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRCQACKVASSMWSKLGRLNRSTMPKLGRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELMFYLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKYMVPDKFSNYSKETKLTKRRVTHDVEDSNYDVDVDDVNYDNDASEPNNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKITGVLPEVLKNLVDRRKKVKSWIKNEKKKNEKADPLRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNALNLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVPLEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKREQGTWLIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFNDDSSSSLLCAANDEERYRGCEPLVLSCPSCSGTFDCPPVSKSICCLLGSEMTTSVSTEESDFNFWRKLCCPKCPDDVKISPAMIANQVKRQAEMFVLMYYKGLLTCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLLRKYTEADLYKQLSYFCHVFDAVSCIEKMEGKSRITIEKEVMKIRPMIDPAASTAQKIRDRCAYGWVRLEDLVITV 1544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02116 1544 CDD POLBc_alpha 903 1313 IPR045846 GO:0003887|GO:1902975
Viun2g02116 1544 SMART polmehr3 569 1077 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g02116 1544 Gene3D Helix hairpin bin 968 1026 - -
Viun2g02116 1544 SUPERFAMILY Ribonuclease H-like 350 857 IPR012337 -
Viun2g02116 1544 MobiDBLite consensus disorder prediction 103 124 - -
Viun2g02116 1544 ProSitePatterns DNA polymerase family B signature. 1065 1073 IPR017964 GO:0000166|GO:0003676
Viun2g02116 1544 FunFam DNA polymerase 1141 1327 - -
Viun2g02116 1544 FunFam DNA polymerase 1336 1530 - -
Viun2g02116 1544 MobiDBLite consensus disorder prediction 1 57 - -
Viun2g02116 1544 Gene3D - 1141 1328 IPR042087 -
Viun2g02116 1544 NCBIfam DNA polymerase (pol2) 51 1295 - -
Viun2g02116 1544 CDD DNA_polB_alpha_exo 569 820 - -
Viun2g02116 1544 Gene3D - 396 522 - -
Viun2g02116 1544 Pfam DNA Polymerase alpha zinc finger 1337 1540 IPR015088 GO:0003887|GO:0006260
Viun2g02116 1544 MobiDBLite consensus disorder prediction 74 133 - -
Viun2g02116 1544 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 17 1542 - -
Viun2g02116 1544 SUPERFAMILY DNA/RNA polymerases 901 1313 IPR043502 -
Viun2g02116 1544 Coils Coil 1077 1111 - -
Viun2g02116 1544 Pfam DNA polymerase family B, exonuclease domain 386 762 IPR006133 -
Viun2g02116 1544 Gene3D - 569 884 IPR036397 GO:0003676
Viun2g02116 1544 Gene3D DNA Polymerase alpha, zinc finger 1336 1529 IPR038256 -
Viun2g02116 1544 MobiDBLite consensus disorder prediction 1 36 - -
Viun2g02116 1544 Pfam DNA polymerase alpha subunit p180 N terminal 25 92 IPR024647 -
Viun2g02116 1544 Gene3D - 356 555 - -
Viun2g02116 1544 FunFam DNA polymerase 968 1024 - -
Viun2g02116 1544 MobiDBLite consensus disorder prediction 885 910 - -
Viun2g02116 1544 Gene3D Palm domain of DNA polymerase 909 1121 IPR023211 -
Viun2g02116 1544 PRINTS DNA-directed DNA-polymerase family B signature 1010 1022 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g02116 1544 PRINTS DNA-directed DNA-polymerase family B signature 1063 1071 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g02116 1544 PRINTS DNA-directed DNA-polymerase family B signature 927 940 IPR006172 GO:0000166|GO:0003676|GO:0003887
Viun2g02116 1544 Pfam DNA polymerase family B 828 1297 IPR006134 GO:0000166|GO:0003677
Viun2g02116 1544 FunFam DNA polymerase 569 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02116 Viun-Chr2 29291432 29304037 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02116 2 1542 Core DNA Replication Machinery Family AT5G67100 60.689 0.0 1817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02116 K02320 - gmx:100798779 2594.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02116 2 29291432 29304037 Viun2g02116 2 29291432 29304037 ECH