Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02115 ATGAATTGGGTTCGCGGCGACTCACTCGGCAGTGGAACCTTCGCCACCGTCAACATCGCCGTGCCGGCAAACTGTTCCACTCGCTTCCCTTCTCCCGCCGCCGTCAAATCCTCTGATTCCCTCAACGCGGGTTCGCTCGAACACGAAAAGGAGATACTCGATCGCCTTGGCTCTTCCCCTTACATCATCAACTGTTTCGGCCACGATCGCACCGTCGAGAACGGCGAGGAGTTCTACAACGTCTTCCTCGAACACGCCGCCGGAGGGTCCCTCGCCGACCAGGTCAAGAAACACGGCGGAAGCCTCCCAGAGCCTTTAGTGCGGCGATGCGCTAGGTCCATCGTGGAAGGACTCAAACATATTCACCACCACGGTTTCGTTCACTGCGACGTGAAGCTCCAGAACGTTCTCGTTTTCGACAACGGCGAGGTGAAAATCGCGGACTTCGGGCTCGCCAAGGAGAAGGGGGAGAAACAGGGGAAGTGCGAGTTCAGGGGAACGCCGTTGTTTATGTCGCCGGAATCGGTGAACGACAATGAGTACGAGCCGCCGGCGGATATCTGGGCCCTGGGATGTGCCGTCGTGGAGATGGTGACCGGAAAACCCGCGTGGGACGTTAGCAACGGGTCGAGTATTTGGTCATTGTTGATTCGGATTGGTATGGGAGAAGAATTGCCAAAGATTCCAGAAGAATTGTCGCAAGAGGGAAAGGACTTTTTGGAAAAGTGCTTTGTTAAGGATCCCAAGAACAGGTGGAGCGCTGAGATGCTTCTGAAGCACCCTTTCATCAAAGTTGACTCATTTTCATTCGAGAAAGTTCATGAGCCATTGCCGTCACCGGCGCCGTCACCAAGGACCCATTTCGATTTTCCTGACTGGACTTCCACCGCAACGGCTTCGCTCCCGTCTTCCGTGGATTCCGACGAGCGGCCCGGATGGTCGTGTTCTCCGGAGAGTCGTCTCCGGCGGCTTGTCACCGATAAGAGACCGGAGAATTGGTCAGAATCGGATGGCTGGATCAGTGTTAGGTGA 1032 0.5572 MNWVRGDSLGSGTFATVNIAVPANCSTRFPSPAAVKSSDSLNAGSLEHEKEILDRLGSSPYIINCFGHDRTVENGEEFYNVFLEHAAGGSLADQVKKHGGSLPEPLVRRCARSIVEGLKHIHHHGFVHCDVKLQNVLVFDNGEVKIADFGLAKEKGEKQGKCEFRGTPLFMSPESVNDNEYEPPADIWALGCAVVEMVTGKPAWDVSNGSSIWSLLIRIGMGEELPKIPEELSQEGKDFLEKCFVKDPKNRWSAEMLLKHPFIKVDSFSFEKVHEPLPSPAPSPRTHFDFPDWTSTATASLPSSVDSDERPGWSCSPESRLRRLVTDKRPENWSESDGWISVR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02115 343 FunFam Mitogen-activated protein kinase kinase kinase 17 2 297 - -
Viun2g02115 343 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Viun2g02115 343 Gene3D Transferase(Phosphotransferase) domain 1 93 283 - -
Viun2g02115 343 MobiDBLite consensus disorder prediction 299 321 - -
Viun2g02115 343 CDD STKc_MAPKKK 2 263 - -
Viun2g02115 343 ProSiteProfiles Protein kinase domain profile. 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02115 343 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Viun2g02115 343 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Viun2g02115 343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Viun2g02115 343 SMART serkin_6 3 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02115 343 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 303 - -
Viun2g02115 343 Pfam Protein kinase domain 5 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02115 Viun-Chr2 29279814 29281230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02115 1 343 MAP Kinase Kinase Kinase AT5G67080 51.404 1.38e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun2g02115 Pkinase 2.1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02115 - - gmx:100782937 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02115 2 29279814 29281230 Viun2g02115 2 29279814 29281230 ECH
Viun2g02115 2 29279814 29281230 Viun3g03827 3 45557301 45558921 PCT