Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02113 ATGGACGTGGACATACTCAAAACCCCCACGAGTGATACCAGCATGGACATGATCATGATGATGCAAATGGAAAAGTTCCCTGAGTTATGTGAACCTTTTTATAACAACACCACCACCACTCCTCTCTACCCGGAAAACGAGTTCTTAACCTCCACCACCAACACCACACTACCTGTCTTCTCCAACGTTAACCAAAACGTCATAACCCCACCACCCACTCTGATCAATCCACCGCCTCCACCTTCCTCTAATTTCGTTATCCAACCACCCATGACACCTCCTCTTGAACCCAACCCGGAGAAGAAGAATTCCGTGGCGGCCATGAGGGAGATGATTTTCCGCGTAGCGGTCATGCAACCTATTCATATAGACCCTGAATCTATCAAGCCCCCGAAGAGAAGGAACGTGAAGATTTCGAAGGATCCGCAGAGTGTGGCGGCGAGGCACAGAAGGGAAAGGATTAGCGAGCGAATAAGGATCCTCCAGAGATTAGTTCCTGGTGGGACCAAAATGGACACGGCTTCTATGTTGGATGAAGCCATACACTACGTAAAGTTCTTGAAGAAACAAGTGCAGACGCTGGAACAAGCCGGAGCAACCAGACCCTTGAGTGTTTTTGGCTTCCCTGGTACTGTGTCAAACGCCACCAATAACGTTAATTATGCTTCCTTCATGAAGAGTTGCCAACCGTGTCATATGCTGGGTTCTGCACCTTCTAAACACATGCTGAGTTGA 735 0.4844 MDVDILKTPTSDTSMDMIMMMQMEKFPELCEPFYNNTTTTPLYPENEFLTSTTNTTLPVFSNVNQNVITPPPTLINPPPPPSSNFVIQPPMTPPLEPNPEKKNSVAAMREMIFRVAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGATRPLSVFGFPGTVSNATNNVNYASFMKSCQPCHMLGSAPSKHMLS 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02113 244 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 80 229 IPR045843 GO:0003700|GO:0006355
Viun2g02113 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 142 197 IPR036638 GO:0046983
Viun2g02113 244 SMART finulus 144 193 IPR011598 GO:0046983
Viun2g02113 244 Pfam Helix-loop-helix DNA-binding domain 148 187 IPR011598 GO:0046983
Viun2g02113 244 CDD bHLH_AtIND_like 139 195 - -
Viun2g02113 244 FunFam BHLH transcription factor 141 203 - -
Viun2g02113 244 Coils Coil 177 197 - -
Viun2g02113 244 Gene3D - 137 202 IPR036638 GO:0046983
Viun2g02113 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 138 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02113 Viun-Chr2 29258290 29259387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02113 11 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 59.375 3.25e-51 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g02113 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02113 - - gmx:100796649 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02113 2 29258290 29259387 Viun2g02113 2 29258290 29259387 ECH