Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02111 ATGGAGCAGCGAAAGCTTGTGGTTTTGGGAATTCCGTGGGATGTCGATACTGAAGGATTAAGGGAATATATGAGCAAATTTGGGGAGCTGGAAGATTGCATTGTAATGAAGGAGCGGTCAACTGGAAGGTCTCGTGGTTTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGAAGTATTATCAAGTGAACATATTCTTGGTAATAGGACGCTGGAAGTCAAAGTGGCCACACCGAAGGAGGAAATGAGGGCACCAGTGAAAAAAGTTACTAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCTGCTTTCCGAAGTCATTTTGAGAAGTATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGTTCCAAAACACATCGTGGAATTGGTTTCATCACTTTTGCAAGTGCAGATTCTGTGGAGAATTTGATGTCAGAAACCCATGAACTGGGAGGTTCTGCGGTGGTGGTTGATCGAGCAACACCGAAGGATGAAGACTTTAAGCCAATTGGCAGCAGAATGCCACCACAGGGAGGAGGATATGGTGCATACAATGCTTACATTTCTGCAGCCACTAGATATGCAGCACTTGGTACTCCTACTTTGTATGATCATCCTGGCCCAATTTATGGACGGGGAGAACCTGCTCGTAGAACTAGTAAAAAAATTTTCGTTGGTCGTCTTCCCCCAGAAGCATCTTCAGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTATGTTCCGAGGGATCCTAAGAGAACAGGCCACAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGTAGGTCTCATGAGATTTGTGGGCATCAGGTTGCAATAGATTCGGCTACACCCGTTGATGATGCAGGGCCCAGTGGGAATTTCATGATGGAATCTTTTGGGGGATATGGCGGTCCTGTGCGATCTTATGGGAGGATGTACGGTAGCTTAGACTTTGACGATTGGGGTTACGGAATTGGGAGACCATCAAGAGCAGCAGATTGGAGGTATAGACCATACTAG 1077 0.4466 MEQRKLVVLGIPWDVDTEGLREYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSSEHILGNRTLEVKVATPKEEMRAPVKKVTRIFVARIPQSVTEAAFRSHFEKYGDITDLYMPKDQGSKTHRGIGFITFASADSVENLMSETHELGGSAVVVDRATPKDEDFKPIGSRMPPQGGGYGAYNAYISAATRYAALGTPTLYDHPGPIYGRGEPARRTSKKIFVGRLPPEASSEDLRQYFGRFGRILDVYVPRDPKRTGHRGFGFVTFAEDGVADRVSRRSHEICGHQVAIDSATPVDDAGPSGNFMMESFGGYGGPVRSYGRMYGSLDFDDWGYGIGRPSRAADWRYRPY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02111 358 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 225 314 - -
Viun2g02111 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 73 IPR000504 GO:0003723
Viun2g02111 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 152 IPR000504 GO:0003723
Viun2g02111 358 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 283 IPR000504 GO:0003723
Viun2g02111 358 Gene3D - 222 307 IPR012677 -
Viun2g02111 358 SMART rrm1_1 93 164 IPR000504 GO:0003723
Viun2g02111 358 SMART rrm1_1 228 299 IPR000504 GO:0003723
Viun2g02111 358 SMART rrm1_1 5 76 IPR000504 GO:0003723
Viun2g02111 358 Gene3D - 1 87 IPR012677 -
Viun2g02111 358 Gene3D - 88 175 IPR012677 -
Viun2g02111 358 SUPERFAMILY RNA-binding domain, RBD 223 326 IPR035979 GO:0003676
Viun2g02111 358 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Viun2g02111 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Viun2g02111 358 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Viun2g02111 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Viun2g02111 358 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 303 IPR000504 GO:0003723
Viun2g02111 358 FunFam RNA-binding family protein isoform 1 224 307 - -
Viun2g02111 358 SUPERFAMILY RNA-binding domain, RBD 4 171 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02111 Viun-Chr2 29233123 29237376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02111 6 277 Eukaryotic Initiation Factors Gene Family AT3G16380 22.939 4.27e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02111 K14411 - gmx:100808084 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02111 2 29233123 29237376 Viun2g02111 2 29233123 29237376 ECH