Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02101 ATGTCGCAACGATCTGTGCCGGCACCGTTTTTGACGAAGACGTATGAGTTGGTGGATGATCCAGGGACGAACGAGGTGATATCGTGGAGTGACAGTGGGAACACGTTTGTTGTGTGGAAACAAGCGGAATTTGCCAAGGATTTGCTTCCTAAATGTTTCAAGCACAATAACTTCTCCAGTTTTGTTCGCCAGCTCAACACCTACGGATTCCGAAAGATTGTGCCAGATAAATGGGAATTCGCAAATGAACATTTCAGGCGAGGGCACAAGGAGCTTCTCTGCGACATTAAACGCCGCAAGACCGTGCCGCAATTGCCAGCGCTGCCACCGGAGGCCGGAAAATCCAGCGGGGGTGGTAACTCTCCGTTAAACTCCGGCGGTGGAGATGACGCTGGGTCCACCTCTACCTCGTCCTCTTCCTCCGGTTGGAAGAACACGGGGTTGGTGGAAACAAACACAACAGCTCCTCATGAGTTATCGAGCGAGAACCAGAAACTGAAGAAGGATAACGAAACGCTGAGTTGCGAGCTGGCACGTGCGAGGAAGCAGTGCGATGAGCTCGTGGGTTTTCTGAAGAACCGTCTGATGGTGGGCCCTGATCAAATAGATCGCATCATGCGGCAAGGAAGTTGCGGATCTGAGAAGGCGGTAGGTGAAGAAGGTGGTGGGGAGTGTTTGAAACTGTTTGGTGTCTGGTTGAAAGAGGATACACTAGCAGACAAAAGACACAACAACCACAAGAGAGCGCGCGAAGACCAAATGGGCTTCGGTGGGCCTCGCCTGAAGGAGTCCAAGCCCGTTGTTGACTTTGAACCTCTAAATCTCATCATGACGAGCAATAAGGTTTGCAACTGA 855 0.5146 MSQRSVPAPFLTKTYELVDDPGTNEVISWSDSGNTFVVWKQAEFAKDLLPKCFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFRRGHKELLCDIKRRKTVPQLPALPPEAGKSSGGGNSPLNSGGGDDAGSTSTSSSSSGWKNTGLVETNTTAPHELSSENQKLKKDNETLSCELARARKQCDELVGFLKNRLMVGPDQIDRIMRQGSCGSEKAVGEEGGGECLKLFGVWLKEDTLADKRHNNHKRAREDQMGFGGPRLKESKPVVDFEPLNLIMTSNKVCN 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02101 284 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02101 284 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02101 284 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02101 284 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02101 284 MobiDBLite consensus disorder prediction 117 160 - -
Viun2g02101 284 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02101 284 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 208 IPR027725 -
Viun2g02101 284 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Viun2g02101 284 Gene3D - 2 101 IPR036388 -
Viun2g02101 284 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02101 284 Coils Coil 163 183 - -
Viun2g02101 284 MobiDBLite consensus disorder prediction 103 168 - -
Viun2g02101 284 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02101 Viun-Chr2 29169796 29171633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02101 2 284 HSF AT4G36990 53.020 7.78e-80 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun2g02101 HSF_DNA-bind 4.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02101 K09419 - gmx:100791543 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02101 2 29169796 29171633 Viun2g02101 2 29169796 29171633 ECH
Viun2g02101 2 29169796 29171633 Viun3g03819 3 45418882 45422445 PCT