Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02080 ATGTCATCATCATCGAATTCGCCGTGCGCGGCGTGCAAGTTTCTGAGGCGAAAGTGCACGCAGGAGTGCGTGTTCGCACCGTACTTTCCGCCGGACAACCCTCAGAGGTTCGCTTACGTGCACAAGGTTTTCGGGGCCAGCAACGTGGCCAAGCTTCTCAATGAACTCAGCGCCTCGCAGCGAGACGACGCCGTAAAGTCCCTCGCTTACGAGGCCGAGGCGCGTCTCAGGGACCCCGTCTACGGCTGCGTGGGCCTCATCTCCGTCCTACAACACAGGCTCAGACAGATCCAGGTGGAACTCAACAATGCAAAGAAGGAACTCGCAACATACATCGGTCCCCAAGCTTTTCAAGGCTTACCAGCCCCCATTCTCCAGCAGCACCCAAACAACCCTTTTTCCGGTTCCCTGTATGGCAACATGGCGGGCGTGACGGCAGCCAGTCACGGCGGGCAGCTGATGATTCGCGACGGCCAGTCGCCGCAGCAGCATCAGATCTTGGAGGCCCAGCAGTTGGCTGCGGCTGTGGCGGCGAGGGAGCAGCAGGAGATGTTCAGGAGTTACGAGCATCAACAGCAGCAGGAGTTCCTTCGGTTCAGTGGTGGGTTCGATGTGGGTTCGGCTTCTTCTGCTGGTGGGTTCAGCCAGATATCCCCAGCTGCTGCTTCCGCTGATCAGTTGTCTCCTTCGTTGGCTTTGGGATCCTTCGATAACGCTTATCACATGCAGCAGCCACAGCAGGGAGAGCCTCATCCTCACAACATTCCTTTCGAGGCTCAGCTTCTGCTCCCTCCACAGCAGAAGCAATCGCCGCAACACACCCAGCAGTCCCAACTCCCCTTTCACCAGCCACAGTCTGAAAGCGAGGATTGTAAGAGTCTTGGTCCATCCTGTTGA 897 0.5775 MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELSASQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELNNAKKELATYIGPQAFQGLPAPILQQHPNNPFSGSLYGNMAGVTAASHGGQLMIRDGQSPQQHQILEAQQLAAAVAAREQQEMFRSYEHQQQQEFLRFSGGFDVGSASSAGGFSQISPAAASADQLSPSLALGSFDNAYHMQQPQQGEPHPHNIPFEAQLLLPPQQKQSPQHTQQSQLPFHQPQSESEDCKSLGPSC 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02080 298 Coils Coil 87 107 - -
Viun2g02080 298 ProSiteProfiles LOB domain profile. 7 108 IPR004883 -
Viun2g02080 298 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 235 - -
Viun2g02080 298 MobiDBLite consensus disorder prediction 242 298 - -
Viun2g02080 298 Pfam Lateral organ boundaries (LOB) domain 8 105 IPR004883 -
Viun2g02080 298 MobiDBLite consensus disorder prediction 263 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02080 Viun-Chr2 28994819 28998439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02080 3 241 AS2 family AT5G66870 54.074 8.53e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun2g02080 LOB 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02080 - - gmx:102664012 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02080 2 28994819 28998439 Viun2g02080 2 28994819 28998439 ECH
Viun2g02080 2 28994819 28998439 Viun3g03783 3 45001492 45003215 PCT
Viun3g03782 3 44994896 44996016 Viun2g02080 2 28994819 28998439 PCT