Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02072 ATGGATCGGCCGGCGACCGGAATTGGATTGGACATGCCGATCATGCACGATAGCGACCGTTACGATTTCGTTCGCGATATTGGGTCTGGGAATTTCGGCGTTGCTAGACTTATGAGGGACAAGCAAACGCAAGAGCTTGTTGCCGTCAAGTATATAGAACGCGGAGAAAAGATTGATCAAAATGTTAAAAGAGAAATCATTAATCACAGGTCTCTAAGACATCCTAACATTATCGGGTTTAAGGAGGTCATTTTAACACCTACCCATCTTGCCATTGTAATGGAATTTGCATCTGGAGGAGAATTATTTTCCCGAATCTGCAATGCAGGGCGTTTTACTGAGGATGAGGCTCGTTTCTTCTTTCAACAACTCATATCCGGTGTCAGCCACTGTCATGCAATGGAAGTGTGTCACCGGGACTTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCAGCACTCCATTTGAAGATATGTGATTTTGGATATTCCAAGTCTTCAATGCTTCATTCACAACCTAACTCAACCGTGGGAACCCCAGCATATATTGCTCCAGAAGTATTGCTGAAGAAAGAGTATGATGGCAAGATTGCGGATGTATGGTCATGTGGAGTAACCTTATATGTGATGCTAGTGGGATCATATCCTTTTGAAGATCCTACAGATCCAAGGGATTCCTGGAAGACAATTCAGAGGGTTCTTGGTGTCCAGTATTCCATTCCAGATGATATACAAATATCTCCTGAATGTGGCCACCTCATCTCAAGGATATTTGTTTTTGACCCTGCAGAGAGAATCACTATTCCTGAAATTTTGAAACATGAATGGTTTCTGAAAAATCTCCCTCCTTACTTGATGGATGAGAATATCATGGGTAAGCAATTTGTAGAGTCAGATCAGCCTATGCAGAGCATTGATACAATTATGCAGATAATTTCAGAAGCTACCGTACCAGCCGCAGGGACCTATTATTTAGACCAGTTTTTGACTGATGACATAATAGATGATGACACGGACGAATCAGACTCTGACTTCGAGCAACATGTAGATAGCAGTGGGGAGATAGTGTATGCCATATAA 1080 0.4241 MDRPATGIGLDMPIMHDSDRYDFVRDIGSGNFGVARLMRDKQTQELVAVKYIERGEKIDQNVKREIINHRSLRHPNIIGFKEVILTPTHLAIVMEFASGGELFSRICNAGRFTEDEARFFFQQLISGVSHCHAMEVCHRDLKLENTLLDGSPALHLKICDFGYSKSSMLHSQPNSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGSYPFEDPTDPRDSWKTIQRVLGVQYSIPDDIQISPECGHLISRIFVFDPAERITIPEILKHEWFLKNLPPYLMDENIMGKQFVESDQPMQSIDTIMQIISEATVPAAGTYYLDQFLTDDIIDDDTDESDSDFEQHVDSSGEIVYAI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02072 359 SUPERFAMILY Protein kinase-like (PK-like) 19 305 IPR011009 -
Viun2g02072 359 ProSiteProfiles Protein kinase domain profile. 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02072 359 PANTHER SERINE/THREONINE KINASE 20 303 - -
Viun2g02072 359 FunFam Serine/threonine-protein kinase SRK2E 12 96 - -
Viun2g02072 359 Gene3D Phosphorylase Kinase; domain 1 1 96 - -
Viun2g02072 359 Gene3D Transferase(Phosphotransferase) domain 1 97 283 - -
Viun2g02072 359 FunFam Serine/threonine-protein kinase SRK2E 97 285 - -
Viun2g02072 359 Pfam Protein kinase domain 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02072 359 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Viun2g02072 359 SMART serkin_6 21 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02072 359 ProSitePatterns Protein kinases ATP-binding region signature. 27 50 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02072 Viun-Chr2 28951970 28957242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02072 20 281 CBL-interacting serine-threonine protein kinases AT5G25110 43.223 3.10e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Viun2g02072 Pkinase 2.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02072 K14498 - gmx:100783967 647.891