Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02068 ATGATCCAAGAACTGTTCGGTGCTGCTACTGCTAGTCTTATAGCAGCTGAAACAAAAATCTCCATTAATAACAATGGAGGAGGACTTCTACTAACACCACCCGCACCGTCTTCTCCTTCTCCGTCTCCTTCTTGCACAACAACTATCACCTCTTCCGCTAACACCGCCACTTCCTCCAACTCCGACAACCAAAATTTGAGGTGCCCTCGTTGTGATTCATCAAACACAAAGTTTTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGTGGCGCTCTCAGGAATGTTCCCATCGGAGGTGGCTGCCGGAAAAGCAAGACCTCCGGCATGTCCAGCTCGGTGGCAAAGCAGGCCGCCACAAAGATGAAAGCAGTGGCATCGGAGCTTGGAAGGCCACAGGGAGTACTCTTTGACCAAGAGCTTCCGCAAACCCCAATCCTTTGGGGTTCACCGCAAAATACTCAACTCATGGCTTTACTAAGAGCTACCCAAAACCAAAACCCTAACCCTAACCCTAGTTCCGTGTCAATTGATGTCAAGAGAGAAGGGAACTTATCGGGATCTCATTCCCACATGGTCACTGAGTCATTGCTCCCAAATGGGTTGTTGAATAGTACTAGAACTGGTCTAGGATACGATGGTGTGGGAGAATTTCCTTCACTGGGTCTATGCAGCTCCTTTTGGAGGAACAATCAAAATCAGAATCAGCAACAAAGCAACGGTTTTGTACTTGGGGAACAGCAAAATAGTGGAGTTCAAGAACTTTACCACAAGTTCAGGTCATCGACGTCAGTTAATTACTGCGGCAGTGATAATTCACCGGTGTTTCTCGGCAACATGGCTTCGTCCTCTTCTTTGTCGAACATTTTGGAGTCATCTTCGGTTTCTGGCAGCGAATTCGGGTGCTGGAATCCAACCCTTTCCTGGTGTGATCTTCCCACAACAAGTGGAGCATATCCTTAA 1002 0.479 MIQELFGAATASLIAAETKISINNNGGGLLLTPPAPSSPSPSPSCTTTITSSANTATSSNSDNQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKTSGMSSSVAKQAATKMKAVASELGRPQGVLFDQELPQTPILWGSPQNTQLMALLRATQNQNPNPNPSSVSIDVKREGNLSGSHSHMVTESLLPNGLLNSTRTGLGYDGVGEFPSLGLCSSFWRNNQNQNQQQSNGFVLGEQQNSGVQELYHKFRSSTSVNYCGSDNSPVFLGNMASSSSLSNILESSSVSGSEFGCWNPTLSWCDLPTTSGAYP 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02068 333 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 56 261 IPR045174 GO:0003700|GO:0006355
Viun2g02068 333 MobiDBLite consensus disorder prediction 42 66 - -
Viun2g02068 333 MobiDBLite consensus disorder prediction 31 66 - -
Viun2g02068 333 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Viun2g02068 333 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Viun2g02068 333 Pfam Dof domain, zinc finger 64 120 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02068 Viun-Chr2 28927464 28929046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02068 38 121 C2C2-Dof Transcription Factor Family AT5G65590 64.773 5.79e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Viun2g02068 zf-Dof 2.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02068 - - gmx:778100 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02068 2 28927464 28929046 Viun2g02068 2 28927464 28929046 ECH
Viun2g02068 2 28927464 28929046 Viun3g03767 3 44825755 44827328 PCT