Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02052 ATGTTTCTTCACCACCATACGAATCTCGTTATAGTCCTCACGATCTTGATAGCGTGCACAACAAGAGCGCACAACCTCACCTGCAATAGGCAATGCGGGAAGCAGAGTGTTCAGTTCCCTTTCGGATTCTCCGAAGGTTGTATAATCAAACTTAACTGTTCCGACAACCAAGTCCAACTTCACGATTTTCTGGTCCAAAACATTACCAACAGCAACATATTCGTCAATCTCCCTGCAAAATGCAACCGCAGCATGGAATCCATTGAGCCACTTTTCGATAACAATTTTTCTCCCACGGTTAACAACAGCTTTCTGGTGCAACATTGCAGCGAGGCGTTAGGTGGGTGCGTTATTCCGGCTTCGAATTTTGTGGAAACCTGCGATAAGAACAGTGGTAATATCAGTTGTTTTTTGAAACAAGATGCGGCGGATGTTCTGACGTACAAAGATTTGAAAGAAACTAAGTGTGATTACTTGTTCTCTGCGATTTCTTTTGGGCAGAGCAAGGAGATTACGCTGCAGTTTCAGGTGGTCGAGTTGGCGTGGTGGCTTCAAGGACAGTGTGAATGTTCTGAAAACGCTACCTGCTCAAAGGTCCAAAGAGGGTTTCGGTGCCAGTGTTTCCATGGTTTCACCGGCGACGGCTTCAGAAACGGCACTGGTTGCCGGAAAACTTCGGCTTCAAGTTGCAGTGCTTCAACAGTAGCTTCCGGAGGGTGTGGAAAAGCAACCAAAATCGGTGTTGCTGTTGGAGCGAGCATAGCTGGAGCTTTGGTGGTGGCTGGTCTGTTTCTTCTATGCTACTGTGCTAGGCGCCGTTCTCTTTGGTTGGGAAAACATACCAGAGTAAAGCGGCAATTACGTGAAGCTGCAGGAAACTCAAGTATACCTTTCTATCCCTACAAAGAAGTAGAAAAAGCCACAAATTCTTTCTCTGAGAAACACAGGCTGGGAACTGGGGCATTTGGTACAGTTTACGCCGGAAAACTGCACAATGATGAATGGGTTGCTATCAAGAAGTTAAGGCAAAGAGACACCAACAGTGCTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAATTTAGTTCGCCTCTTAGGTTGCTGCATAGAGAAGGGAGAGCAGATCCTTGTTTATGAATATATGCAAAACGGAACACTTTCTCAGCACTTGCAAAGAGAGAGGAGTGAAGGATTGCCGTGGACTGTAAGACTTACCATAGCTACTGAAACTGCTAATGCTATAGCATATCTCCATTCCGCAATTCATCCCCCAATTTACCACAGAGACATAAAATCTAGTAATATACTCTTGGATTATCACTTCAAATCTAAGATAGCTGATTTTGGGCTTTCTAGGCTCGGCATGACAGAAACATCTCATATCTCCACCGCTCCACAGGGGACTCCGGGTTATGTGGATCCCCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTGTACAGTTTCGGAGTGGTCTTGGTAGAGATAATAACCGCCATGAAAGCGGTTGATTTTTCTCGACCTCGGAGTGAGGTTAACTTAGCTGCACTTGCCGTAGATAAGATTAGGAGGGGTGCTGTAGATGAGATCATAGACCCCTTCCTTGAACCACACAGAGATGCTTGGACACTGTATTCTATTCATAAGGTAGCTGAGCTTGCATTTAGATGCCTTGCTTTTCACAGTGACATGAGACCTACTATGATGGAAGTGGCAGAGGAGCTAGAACACATTAAACGCAGTGGATGGGCAACTATGGAGGATACTGCCATGGCTTCATCGGATGGATCCACTTGTTCATCACCTCGCAATGGAAGTGAGAAGTCACTGAGTGTTATCAAAAAGGCTGGCCAAGGGAGTGCGAGATTGATAGTTCCCCACAAGATTGAGAGGTTTTTTCATTCTGTTGAGGTTAAGGACAGTTCTCCTGTATCAGTGCAGGATCCTATTCATTGGTCAAGTGGACACAGCTCACCTTCTTCAAACAGCTTGTTGGTAAATGTCATCCCTTGA 2037 0.4531 MFLHHHTNLVIVLTILIACTTRAHNLTCNRQCGKQSVQFPFGFSEGCIIKLNCSDNQVQLHDFLVQNITNSNIFVNLPAKCNRSMESIEPLFDNNFSPTVNNSFLVQHCSEALGGCVIPASNFVETCDKNSGNISCFLKQDAADVLTYKDLKETKCDYLFSAISFGQSKEITLQFQVVELAWWLQGQCECSENATCSKVQRGFRCQCFHGFTGDGFRNGTGCRKTSASSCSASTVASGGCGKATKIGVAVGASIAGALVVAGLFLLCYCARRRSLWLGKHTRVKRQLREAAGNSSIPFYPYKEVEKATNSFSEKHRLGTGAFGTVYAGKLHNDEWVAIKKLRQRDTNSADQVMNEIKLLSSVSHPNLVRLLGCCIEKGEQILVYEYMQNGTLSQHLQRERSEGLPWTVRLTIATETANAIAYLHSAIHPPIYHRDIKSSNILLDYHFKSKIADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKAVDFSRPRSEVNLAALAVDKIRRGAVDEIIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPTMMEVAEELEHIKRSGWATMEDTAMASSDGSTCSSPRNGSEKSLSVIKKAGQGSARLIVPHKIERFFHSVEVKDSSPVSVQDPIHWSSGHSSPSSNSLLVNVIP 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02052 678 Gene3D Laminin 181 222 - -
Viun2g02052 678 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 622 IPR044652 GO:0004672
Viun2g02052 678 Gene3D Phosphorylase Kinase; domain 1 282 386 - -
Viun2g02052 678 FunFam Wall-associated receptor kinase-like 14 279 386 - -
Viun2g02052 678 ProSiteProfiles Protein kinase domain profile. 311 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02052 678 SMART serkin_6 311 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02052 678 FunFam Wall-associated receptor kinase-like 20 387 596 - -
Viun2g02052 678 SUPERFAMILY Protein kinase-like (PK-like) 291 584 IPR011009 -
Viun2g02052 678 Gene3D Transferase(Phosphotransferase) domain 1 387 604 - -
Viun2g02052 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Viun2g02052 678 ProSitePatterns Protein kinases ATP-binding region signature. 317 340 IPR017441 GO:0005524
Viun2g02052 678 CDD EGF 187 215 - -
Viun2g02052 678 MobiDBLite consensus disorder prediction 657 678 - -
Viun2g02052 678 Pfam Protein tyrosine and serine/threonine kinase 314 583 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02052 Viun-Chr2 28799834 28804208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02052 1 676 Receptor kinase-like Gene Family AT2G23450 55.099 0.0 739
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Viun2g02052 PK_Tyr_Ser-Thr 9.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02052 - - vum:124829194 1182.55