Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02029 ATGTCCCAAGATTTTCAACCAGGAATCTTCAGCTTCCCGAATGGGTTGGAGAGAGGAAGGGCGAGTCCGCAGCAGCAGATCCGGAGGGAGAAAGTAAGGTTCGAGGCAGCGCCATTGGTAGGGATAGAGGAAGAGGAACCGGTGTACGAGAGTGCCGGGATGTTGTCGGAGATGTTCAATTTTCCGCCTGCGGCTGCGGCGGAATTGATGGAGCAGCAGCCGGTGACGGCAACGTTTAGGGCGGCGAGGCAGGGTGGAGAGTGGTACGGAAACAGACAACAACAAGGGGTGAATATGATGATGGGTGGATTGGGGGATTCGAAGAACCAAAACGGTGTGAATAACAACCAGCATCAACCACATCACCACCAGATTTCAAGCATTAATGCTGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAACCCTCAAACGAGGTCGCCTTCCCCTCCTCAAAGCCACGCCACTCCTTCTTCAACACTCCACATGTTGCTTCCCAATCCTTCTTCCAATTCCCTCCAAGGTTTCACCGGTTCGGGCGTGGGAGGGTCTTTTGGGCAATTCACATGGGTTCCCGAGAGTGCTCATCATCAGCAAGGAGGCGTGATGGAAGGGCAAGGTCTTTCGCTATCGTTGTCTTCTTCGCTGGAAGCAGCGAAAGCTGAGGAATTGAGGATGGGGGACACTGGTTTTCTATATTACAATCATCAACAAGGGGGTGGTGTGGGAGCTGCCGGTTCTTCTTCTTCTTCCACAGTTCAATTTCCGTACAAGAACAACAGTCATCACCAAGCATTGCATTTGCAAGGGGTGATAGGACACGACAACAACCAGCAGGGACATGTTGGGTTCGGGTCATCCTCGTTAGGTGTAGTTAATGTTCTGAGAAACACAAAGTATGTGAAGGCTGCACAGGAGTTGCTTGAAGAGTTTTGCAGTGTTGGAAGGGGTCAGTTTAAGAAGAGCAAGTTGAATAGGCAGAATTCAAACCCTAATTCAAATCCCGACGGTGGTGGTGGTGGCGGTGGTTCTTCGCCTTCGTCAAAAGATGCTGGTATTCCTCCTCCTCCGCCTCCTCCTTTGTCAGCCGGTGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCAATGCTGGACGAGGTGGACAGGAGATACAACCATTACTGCGAGCAGATGCAAATGGTGGTGAACTCATTCGACCTGATGATGGGTTTTGGTGCGGCGGTTCCATACACAGCACTGGCGCAGAAAGCAATGTCTCGGCATTTCCGGTGTCTGAAGGACGCAATAACAGCACAGCTGAAGCAAAGTTGCGAGCTACTAGGAGAGAAAGAGGGGGCGGGGACCTCAGGTTTGACCAAGGGTGAGACCCCAAGGCTTAAGGTTCTAGAACAAAGCCTAAGACAGCAGAGAGCCTTTCACCAGATGGGGATGATGGAACAAGAAGCTTGGAGACCCCAGAGAGGCTTGCCTGAACGTTCTGTCAACATTTTGAGAGCCTGGCTTTTCGAACATTTTCTCCATCCGTATCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGACTATCGCGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGTTGTGGAAACCCATGGTGGAAGAGATGTACCAACAAGAACTTAAAGAAACAGAGAGTACAGAAGAGAGAGAAAATAACCAAAGCAACAACAGCAATATGAGTGGGAACCAAGCACAAACTCCAAGCACACCAGGAGCAGCTACGACGTCAACAGCAACAACAGCTGCACCACCAACAATCACAACAACAAAACCAACAGGGAAAAAATCCGATATCAATGCCACCGAAAGCGACTCGTCACTTGTTGCAATCAATAGACAAGGCTTCTCGGAAAACCAAGGAAAGCACTCCACCACCACCACCACCTCCACCACTCTCATGGCCTCCGTCAGCGCCACCACCTCTGAGATTGCACCACCCGCCTCGCAGTGCTTCGACTCAGATCTGCCCCCACAGAGATTAATGCCTACTGATGACACGTGTCGCTTGGTCACACCAGATTTTGGGACCACGTCTGCAGCTGCTGACATTGGATCTACTCTCATTAGATTTGGGACCACAGTTGGTGACGTGTCACTCACCCTAGGGCTTCGCCACGCCGGGAACATGCCGGAGAAAACTCCTTTCTCTGTTAGAGACTTTGGAGCAATTTAA 2220 0.5063 MSQDFQPGIFSFPNGLERGRASPQQQIRREKVRFEAAPLVGIEEEEPVYESAGMLSEMFNFPPAAAAELMEQQPVTATFRAARQGGEWYGNRQQQGVNMMMGGLGDSKNQNGVNNNQHQPHHHQISSINADSAAAMQLFLMNPQTRSPSPPQSHATPSSTLHMLLPNPSSNSLQGFTGSGVGGSFGQFTWVPESAHHQQGGVMEGQGLSLSLSSSLEAAKAEELRMGDTGFLYYNHQQGGGVGAAGSSSSSTVQFPYKNNSHHQALHLQGVIGHDNNQQGHVGFGSSSLGVVNVLRNTKYVKAAQELLEEFCSVGRGQFKKSKLNRQNSNPNSNPDGGGGGGGSSPSSKDAGIPPPPPPPLSAGDRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVNSFDLMMGFGAAVPYTALAQKAMSRHFRCLKDAITAQLKQSCELLGEKEGAGTSGLTKGETPRLKVLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEEMYQQELKETESTEERENNQSNNSNMSGNQAQTPSTPGAATTSTATTAAPPTITTTKPTGKKSDINATESDSSLVAINRQGFSENQGKHSTTTTTSTTLMASVSATTSEIAPPASQCFDSDLPPQRLMPTDDTCRLVTPDFGTTSAAADIGSTLIRFGTTVGDVSLTLGLRHAGNMPEKTPFSVRDFGAI 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02029 739 Pfam Associated with HOX 294 433 IPR006563 -
Viun2g02029 739 MobiDBLite consensus disorder prediction 322 367 - -
Viun2g02029 739 Gene3D - 489 551 - -
Viun2g02029 739 CDD homeodomain 486 547 IPR001356 GO:0003677
Viun2g02029 739 SUPERFAMILY Homeodomain-like 488 553 IPR009057 -
Viun2g02029 739 Coils Coil 549 569 - -
Viun2g02029 739 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 160 571 - -
Viun2g02029 739 Pfam Homeobox KN domain 503 542 IPR008422 GO:0003677|GO:0006355
Viun2g02029 739 SMART HOX_1 486 550 IPR001356 GO:0003677
Viun2g02029 739 MobiDBLite consensus disorder prediction 1 26 - -
Viun2g02029 739 MobiDBLite consensus disorder prediction 322 341 - -
Viun2g02029 739 ProSiteProfiles 'Homeobox' domain profile. 483 546 IPR001356 GO:0003677
Viun2g02029 739 MobiDBLite consensus disorder prediction 566 620 - -
Viun2g02029 739 SMART prehox3 289 434 IPR006563 -
Viun2g02029 739 MobiDBLite consensus disorder prediction 106 126 - -
Viun2g02029 739 MobiDBLite consensus disorder prediction 554 620 - -
Viun2g02029 739 FunFam BEL1-like homeodomain protein 4 489 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02029 Viun-Chr2 28690990 28698091 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02029 289 737 Homeobox Transcription Factor Family AT2G23760 54.257 3.40e-150 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Viun2g02029 POX 5.7e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02029 - - gmx:100786231 1030.01