Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02027 ATGGGTTGGTTTAGAAAGTTGCTTAAAGGTTCTGATCATATTTCACGTGGACAATACCAAGGCAAATATGGAGAGGACAGAATTTGGGATAACCATCGTAATTCAATGGATGACTTAACGGATATAGAGAAAGAAGACATTGACCGTGCGATTGCACTCTCTCTGTCAGAGGAGGATCATCTTAAAGGGAAAAAAGTTGTTGAGGATGATTCTCAGTCTGAAGATGATAAACTCTGTAAAATTGATGATGAGGAAGATGAATATCTTGCTAAAATTGAGCAAGAAGATGAATATCTTGCTAAAATTCAACAAGAAGAGGATGAACGTCTTGCTAAAGTTCAGCAAGAAGAAGATGAACGCCTTGCTAAAATTCAACGAGAAGATGAGCGTCTTGCTAAACTTCAACAAGATGAAGATGAACGTCTGGCTAAAATTCAACAAGATGAAGTTGAACGTCTGGCTAAAGCTCAACTTGAGGAAGACGAGCAACTTGCTCGGGCAATTCAAGAAAGTTTGACCATTGGTTCTCCTCCTCGATCTGACAATGATTCTTCATTTCTATCTTATCCTCACCTCTTTCCCCCTGGATATAGAATCTGTGCTGGGTGCAAGGCTGAGATTGGCCATGGAAGATTTTTAAGTTGCATGGGAGGTGTCTGGCACCCAGAATGCTTCTGCTGCAACGCATGTCGTCGGCCAATCACTGATTATGAGTTTTCCATGTCTAGCAATCGCCCTTACCACAAATCATGCTATAGGGAGAAGCATCACCCCAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCATCTGGCCTCATTGAATATAGAGCTCATCCTTTCTGGCTACAAAAATACTGTCCATCTCATGAGCTTGATGGCACTCCTCGTTGCTGTAGCTGTGAAAGAATGGAGCCAAGGGATGCTAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTTTAGAGTGTCTAGACTCATCAATTATGGATACTCATGAATGCCAACCTCTCTACCTTGAAATACAAGAATTTTATGAAGGTTTAAATATGAAATTGGAGCAGCAAATTCCTATGCTCTTAGTTGAGAGACAAGCTCTGAATGAGGCCATGGAGGGAGAAAAGAATGGTCATCACCACTTACCTGAAACCAGAGGACTCTGCTTGTCAGAAGAGCAAACTGTCACTACTATTTCAAGGAGGCCGAGGATTGGAGCCGGCTACCGAGTCACCGACATGATAACTGAACCTTTTAAGCTGATCCGTCGCTGTGAAGTGACAGCCATTCTAGTTTTGTATGGTCTTCCTAGGTTGTTAACAGGATCAATCCTAGCTCACGAGATGATGCATGCATGGCTTAGGCTTAAAGGCTACCCTAACCTCAGCCCAGAAGTTGAAGAAGGAATCTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAGCTGTATTCAGGATCTGGGAATAGCGGTGCATCATCATCTTCATCTTCGTCTTCATCATCACCTTCCTCTTCTGCATCATCAAAGAAGGGTAAACGTTCCGAATTTGAGAAGAAACTTGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCCTCAGCTTATGGAGATGGATTCAGATCGGGTAACCAAGCAATGCTCAAGTATGGGCTCAAAAGCACCCTTGATCATATCCATATGACAGGTAGTTTTCCATATTGA 1707 0.4206 MGWFRKLLKGSDHISRGQYQGKYGEDRIWDNHRNSMDDLTDIEKEDIDRAIALSLSEEDHLKGKKVVEDDSQSEDDKLCKIDDEEDEYLAKIEQEDEYLAKIQQEEDERLAKVQQEEDERLAKIQREDERLAKLQQDEDERLAKIQQDEVERLAKAQLEEDEQLARAIQESLTIGSPPRSDNDSSFLSYPHLFPPGYRICAGCKAEIGHGRFLSCMGGVWHPECFCCNACRRPITDYEFSMSSNRPYHKSCYREKHHPRCDVCKNFIPTNSSGLIEYRAHPFWLQKYCPSHELDGTPRCCSCERMEPRDAKYLLLDDGRKLCLECLDSSIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTISRRPRIGAGYRVTDMITEPFKLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSELYSGSGNSGASSSSSSSSSSPSSSASSKKGKRSEFEKKLGEFFKHQIESDTSSAYGDGFRSGNQAMLKYGLKSTLDHIHMTGSFPY 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02027 568 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 159 172 IPR003903 -
Viun2g02027 568 PANTHER PROTEIN DA1-RELATED 2 3 568 IPR045218 -
Viun2g02027 568 Gene3D Cysteine Rich Protein 197 258 - -
Viun2g02027 568 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 227 283 - -
Viun2g02027 568 FunFam Protein DA1-related 1 194 253 - -
Viun2g02027 568 MobiDBLite consensus disorder prediction 489 514 - -
Viun2g02027 568 ProSitePatterns LIM zinc-binding domain signature. 200 234 IPR001781 -
Viun2g02027 568 SMART uim 42 61 IPR003903 -
Viun2g02027 568 SMART uim 159 178 IPR003903 -
Viun2g02027 568 ProSiteProfiles LIM domain profile. 198 258 IPR001781 -
Viun2g02027 568 Coils Coil 99 119 - -
Viun2g02027 568 CDD LIM_DA1 200 252 - -
Viun2g02027 568 Pfam LIM domain 200 255 IPR001781 -
Viun2g02027 568 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 192 225 - -
Viun2g02027 568 Pfam Protein DA1 349 563 IPR022087 -
Viun2g02027 568 SMART lim_4 199 251 IPR001781 -
Viun2g02027 568 MobiDBLite consensus disorder prediction 489 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02027 Viun-Chr2 28663713 28670164 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun2g02027 DA1-like 4.8e-106 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02027 - - vum:124826554 1076.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02027 2 28663713 28670164 Viun2g02027 2 28663713 28670164 ECH
Viun3g03721 3 44237748 44242171 Viun2g02027 2 28663713 28670164 ECH
Viun2g02027 2 28663713 28670164 Viun3g03721 3 44237748 44242171 PCT