Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02019 ATGGCTGCCTCGTTTGTTTCTCTTTCTCTCCGTGCTCAGATTCTTTATGTTGTACTCATGTTTTTCAGTTTTATTGCAGCTCAATCACAACAAACCAATGGAACAAACTTTTCATGCCCTTCCGATTCACCTCCTTCTTGTGAAACCTATGTGACATACATAGCCCAGTCTCCAAATTTTTTGAGTGTGACAAGCGTATCTAATATATTTGACACGAGTCCTTTGTCAATTGCAAGAGCCAGCAACTTAAAGAATGAGGAAGACAAGTTGATTCCAGGCCAAGCCTTACTGGTACCAGTAACCTGTGGTTGCACGAGAAACCGCTCTTTCGCCAATATCTCCTATGAGATCAACCCAGGTGATAGCTTCTACTTTGTTTCAACCACTTCATACCAGAATCTCACAAATTGGCATGTAGTGATGGATTTAAACCCCGGTCTAAGTCCATTTACTTTGCCAATAGGCATTAAAGTTGTAATGCCTTTATTCTGCAAGTGTCCTTCAAAGAACCAGCTTGACAGAGGGATAAAGTACCTGATCACTCACGTGTGGCAGCCCAGTGACAATGTTTCCCTTGTAAGCAACAAGTTTGGTGCATCACCAGAGGACATATTAAGTGAAAACAACTATGGCCAAAACTTCACTGCCGCAAACAACCTTCCAGTTTTGATCCCAGTTACACGCTTGCCAGATCTTATTCAATCTCCTTCAGATGGAAGAAAACACAGAATTGGTCTTCCAGTTATAATTGGTATCAGCCTGGGATGCACACTACTGGTTGTGGTTTCAGCAATATTACTGGTGTATGTATGTTCTCTGAAAATGAAGAGTTTGAATAGGAGTGCCTCATCAGCTGAAACTGCAGATAAACTACTTTCTGGAGTTTCAGGCTACGTAAGTAAGCCTACCATGTATGAAACTGGTGCAATCTTGGAGGCTACCATGAACCTCAGTGAGCAGTGCAAGATTGGGGAATCAGTGTACAAGGCTAACATAGAGGGTAAGGTTTTAGCAATAAAAAGATTCAAGGAAGATGTCACGGAGGAGCTGAAAATTCTGCAGAAGGTGAATCATGGAAATCTGGTGAAACTAATGGGTGTCTCATCAGACAATGAGGGAAATTGTTTTGTGGTTTATGAATATGAAGAAAATGGATCTCTTGATGACTGGCTTTTCGCCAAGTCTTGTTCAGAGACTTCAAACTCAAGGACCTCGCTTACATGGTGCCAGAGGATAAGCATAGCAGTGGATGTTGCAATGGGTCTGCAGTACATGCATGAACATGCTTATCCAAGAATAGTCCACAGGGACATCACAAGCAGTAATATCCTTCTTGACTCTAACTTCAAGGCCAAGATAGCAAATTTTTCCATGGCCAGAACTTTTACCAACCCCATGATTTCAAAAATAGATGTATTTGCTTTTGGGGTGGTTCTGATAGAATTGCTTACTGGCAAGAAAGCCATGACAACCAAAGAAAATGGTGAGGTGATTATGCTGTGGAAGGACATTTGGAAGATCTTTGATGAAGAAGAGAATAAAGAGGAAAGGCTCAGAAAATGGATGGATCCTAAGTTAGATAATTATTATCCTATTGATTATGCTCTCAGCTTGGCCTCCTTGGCAGTGAATTGTACTGCAGACAAGTCTTTGTCCAGACCAACCATAGCAGAAATTGTACTCAGTCTCTCCCTTCTAACTCAACCATCTCCCTCGACACTGGAGAGATCCTTGACTTCTTCTGGATTAGATGTAGAAGCTACTCAAATTGTCACTTCCATCGCAGCTCGTTGA 1794 0.4169 MAASFVSLSLRAQILYVVLMFFSFIAAQSQQTNGTNFSCPSDSPPSCETYVTYIAQSPNFLSVTSVSNIFDTSPLSIARASNLKNEEDKLIPGQALLVPVTCGCTRNRSFANISYEINPGDSFYFVSTTSYQNLTNWHVVMDLNPGLSPFTLPIGIKVVMPLFCKCPSKNQLDRGIKYLITHVWQPSDNVSLVSNKFGASPEDILSENNYGQNFTAANNLPVLIPVTRLPDLIQSPSDGRKHRIGLPVIIGISLGCTLLVVVSAILLVYVCSLKMKSLNRSASSAETADKLLSGVSGYVSKPTMYETGAILEATMNLSEQCKIGESVYKANIEGKVLAIKRFKEDVTEELKILQKVNHGNLVKLMGVSSDNEGNCFVVYEYEENGSLDDWLFAKSCSETSNSRTSLTWCQRISIAVDVAMGLQYMHEHAYPRIVHRDITSSNILLDSNFKAKIANFSMARTFTNPMISKIDVFAFGVVLIELLTGKKAMTTKENGEVIMLWKDIWKIFDEEENKEERLRKWMDPKLDNYYPIDYALSLASLAVNCTADKSLSRPTIAEIVLSLSLLTQPSPSTLERSLTSSGLDVEATQIVTSIAAR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02019 597 Gene3D Phosphorylase Kinase; domain 1 293 381 - -
Viun2g02019 597 FunFam Os07g0541700 protein 383 473 - -
Viun2g02019 597 Pfam LysM domain 63 99 IPR018392 -
Viun2g02019 597 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 16 571 - -
Viun2g02019 597 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Viun2g02019 597 Gene3D Transferase(Phosphotransferase) domain 1 383 465 - -
Viun2g02019 597 SUPERFAMILY Protein kinase-like (PK-like) 314 563 IPR011009 -
Viun2g02019 597 Gene3D Transferase(Phosphotransferase) domain 1 466 580 - -
Viun2g02019 597 ProSiteProfiles LysM domain profile. 51 98 IPR018392 -
Viun2g02019 597 ProSiteProfiles Protein kinase domain profile. 285 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02019 597 Pfam Protein tyrosine and serine/threonine kinase 341 463 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02019 Viun-Chr2 28607904 28610337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02019 8 566 Receptor kinase-like Gene Family AT3G21630 29.630 1.46e-69 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun2g02019 PK_Tyr_Ser-Thr 1.1e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02019 - - vra:106777834 1110.13