Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02018 ATGCATCTCTTTCCCTTCACTCCCATAATCCTTTTCACCCTTTTGATTCACAATTTCTCTCTGATTCTGGGGCAGCAACCTTACATTGGTTTAGGCACAGTAGCATGCCCTCGAAGTGGTAACAAAAACTCTATTCGTGGTTACACTTGTAATGGTGCAAACAGCTGCGAAGCATTCCTTACTTTCAGATCTCAACCCATTTACAACTCTGTCTCCACAATATCAACTTTATTGGGTTCTGACCCCTCCCAACTTGCCAAAATAAATTCCGTTTCCCTCAATGACACCTTCCAAACAAACAAATTGGTGCTTGTTCCTGTCAACTGTTCCTGTGCAGGAGGTGAGTATTATCAAACAAACACATCCTATGTGTTCCAGAATTCAGAAACTTACTTCTTGATTGCTAACAACACTTTCGAGGGCCTCACAACATGTCAAGCTTTGCAGAATCAAAACCACAACCCAGCAAACATATACCCAGGTAGAAAACTTCTAGTGCCTCTCAGATGTGCTTGTCCCACAAAAAACCAAACCGAGAAAGGCATCAGGTACCTCTTAAGCTACTTGGTGAATTGGGGTGATTCTGTTTCACTCATCGCTGACAAATTTGGTGTTCGCTCTTCGACCACTCTTGAAGCTAATAACCTCACTTTGACACAATCCACGATCTATCCCTTTACTACACTTCTAATTCCCCTTCACGATAAGCCCTCAAGTTCTCAAACCGTTTCTCCAACTCAACTTACGCCATCACCCTCATCACCCCCCTCTTCTCATCATAAGAAAAAATGGGTGTTTGTTGTTGTTGGAGTTGTTGTAGGAGCTCTTGCCTTAACATCAGCTCTCTGTGCTGTCGTTTTCTTCACACGCTGTCGGAAAAATAGAAACGAAGATGGGTCGATGGTAGTGTCCAAGAGTTTTGAGGAAGGTAAGGAAAAAGCACCAAGGAGTGTAAATGAAAAATTGTCAGAGGTCATGTCTGGCATAGCTCAGTCGTTCAAGGTGTATGATTTTGAGGAACTAAAGCGAGCAACAGATAACTTCAGTCCTAGCTACTGGATCAAAGGGTCTGTTTATCGCGGTGTGATTAACGGTGATTTGGCTGCAATTAAAAAGATAGAAGGTGATGTGACAAAGGAGATGGAGATACTGAGCAGAATCAACCATTCGAATGTTATACGCCTTTCCGGGGTTAGCTTCCACGAGGGGCGTTGGTACTTTGTTTATGAGTATGCTGCTAATGGGGCTTTGAGTGAATGGATCTACTTCAACAACGTGGATGGGAAGTTTCTGAGTTGGACGCAGAGAATACAGATTGCATTGGATGTGGCCACAGGACTCGATTATCTTCACAGTTTCAGTTCTCCTTATATCCACAAGGATATTAAGAGTAGTAACATTCTTCTGGGTGCTGACTTCAGGGGAAAGATCGCAAATTTAAGCCTTGTGAGGCGTGTGGAAGGAGGGGATGACCAGTTTCCTGCCACTAGGCACATTGTTGGGACAAGAGGCTACATGGCTCCCGAGTATTTGGAACATGGTCTTGTGTCTACAAAGCTTGATGTGTATGCTTTTGGGGTAGTGATGCTGGAAATGATGACAGGAAAAGAGGTTGCTGCTATTGTAACAGAAGACGAGACAAACTTGTCAAATGTTTTGCGCGTCATGCTTGGTGAGGAAAGTGGCCAGGAGAGGTTGAAGGAGTTTGTGGATCCTTCTTTGCGAGAAAATTTTCCGTTTGAACTTGGTATGTTTGTGGTTGAGATGATTGATAATTGCATATCGAATGATCCAGCAAGTCGTCCTAGTGTGCATGAAATTGTGCAATCTCTGTCAAGAACCCTGAATTCTTCACTGAGTTGGGAAAGGTCAATGAATGTCCCACGAAGCTAA 1893 0.4348 MHLFPFTPIILFTLLIHNFSLILGQQPYIGLGTVACPRSGNKNSIRGYTCNGANSCEAFLTFRSQPIYNSVSTISTLLGSDPSQLAKINSVSLNDTFQTNKLVLVPVNCSCAGGEYYQTNTSYVFQNSETYFLIANNTFEGLTTCQALQNQNHNPANIYPGRKLLVPLRCACPTKNQTEKGIRYLLSYLVNWGDSVSLIADKFGVRSSTTLEANNLTLTQSTIYPFTTLLIPLHDKPSSSQTVSPTQLTPSPSSPPSSHHKKKWVFVVVGVVVGALALTSALCAVVFFTRCRKNRNEDGSMVVSKSFEEGKEKAPRSVNEKLSEVMSGIAQSFKVYDFEELKRATDNFSPSYWIKGSVYRGVINGDLAAIKKIEGDVTKEMEILSRINHSNVIRLSGVSFHEGRWYFVYEYAANGALSEWIYFNNVDGKFLSWTQRIQIALDVATGLDYLHSFSSPYIHKDIKSSNILLGADFRGKIANLSLVRRVEGGDDQFPATRHIVGTRGYMAPEYLEHGLVSTKLDVYAFGVVMLEMMTGKEVAAIVTEDETNLSNVLRVMLGEESGQERLKEFVDPSLRENFPFELGMFVVEMIDNCISNDPASRPSVHEIVQSLSRTLNSSLSWERSMNVPRS 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02018 630 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 623 - -
Viun2g02018 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Viun2g02018 630 Gene3D LysM domain 187 235 IPR036779 -
Viun2g02018 630 SMART LysM_2 187 232 IPR018392 -
Viun2g02018 630 SMART LysM_2 122 167 IPR018392 -
Viun2g02018 630 MobiDBLite consensus disorder prediction 237 260 - -
Viun2g02018 630 FunFam PTI1-like tyrosine-protein kinase 3 412 625 - -
Viun2g02018 630 Gene3D Phosphorylase Kinase; domain 1 317 411 - -
Viun2g02018 630 SMART serkin_6 353 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02018 630 Pfam LysM domain 123 167 IPR018392 -
Viun2g02018 630 Pfam LysM domain 188 232 IPR018392 -
Viun2g02018 630 ProSiteProfiles Protein kinase domain profile. 287 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02018 630 ProSiteProfiles LysM domain profile. 121 166 IPR018392 -
Viun2g02018 630 MobiDBLite consensus disorder prediction 237 258 - -
Viun2g02018 630 CDD LysM 187 231 IPR018392 -
Viun2g02018 630 Gene3D Transferase(Phosphotransferase) domain 1 412 624 - -
Viun2g02018 630 SUPERFAMILY Protein kinase-like (PK-like) 330 611 IPR011009 -
Viun2g02018 630 ProSiteProfiles LysM domain profile. 186 231 IPR018392 -
Viun2g02018 630 Pfam Protein kinase domain 358 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02018 Viun-Chr2 28603005 28605283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02018 4 624 Receptor kinase-like Gene Family AT2G23770 41.981 1.11e-163 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Viun2g02018 Pkinase 1.5e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02018 - - gmx:100779907 1004.97