Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02017 ATGACAATGAATGTGATTGATCGATGTTGGAGATTGAATCCTGAATGGAGGATAAATCGACCTCAACTAGCAACATGTTCTATTGGCTACACTGGTAAGATGACAAACAACACTGGTAAAGACCTCGTTCATTATAAAGTTATTGACCCTAATGATGATCCTGTTAGCCCTAAACCTGGTACCCTGAGGTATGGAGCCTCTGTAATTCAACGTAAAGTGTGGATCACATTCGAAAAAGACATGCATATTAAACTTGAAAGACCCCTTCTTATTAGTAGTTTTACAACCATTGACGGTCGAGGCGTTAATGTTGACATTGCTGAAAATGCATGTTTAATGATCTTTAAGGCCACAAATGTAATCATCCATAACATTCGACTTCATCATTGCAAACCTCAAGCTCCAGGGATTGTGATGGGACCAGAAGGAAAGGTGATTCCTTTGGGCCATGTAGATGGAGATGCAATAAGATTGATCACTGCTTCAAAGATTTGGATTGATCATAATACACTTTATAATTGCCAAGATGGCTTACTTGATGTAACACGGGGTTCAACTGATGTGACTATATCTAATAATTGGTTTAGAAATCAAGACAAAGTAATGCTTCTTGGACATGATGATGGTTATATAAGAGACCAAAACATGAAGGTTACTGTTATATACAACCACTTTGGACCTAATTGTAATCAACGCATGCCCAGGATTCGTCATGGGTATGCACATGTTGTCAACAATCTTTACCTAGGATGGGTGCAATATGCCATCGGGGGAAGTATGAGACCTAGTCTCAAAAGTGAAGCTAATCTCTTTATAGCACCAACAAAAGGGAGTAAGGAGGTGACATGGAGAAAAAATAATCACGCAAATGAAGATGCATGGGAGTTTTATTCCGTGAAAGATGCATTTGAAAATGGAGCTTCTTTCACAATGACAAGAGGAGGAGAAGTACCAAAACCAAAATATAGTGAAGAACAATGTTTTAATGTTGTTAATGTTAAGTATGTGAGATTACTAACTCGTTCATCGGGTGTATTACAATGTACTAAAACATTTCTATGTTAA 1065 0.3765 MTMNVIDRCWRLNPEWRINRPQLATCSIGYTGKMTNNTGKDLVHYKVIDPNDDPVSPKPGTLRYGASVIQRKVWITFEKDMHIKLERPLLISSFTTIDGRGVNVDIAENACLMIFKATNVIIHNIRLHHCKPQAPGIVMGPEGKVIPLGHVDGDAIRLITASKIWIDHNTLYNCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTVIYNHFGPNCNQRMPRIRHGYAHVVNNLYLGWVQYAIGGSMRPSLKSEANLFIAPTKGSKEVTWRKNNHANEDAWEFYSVKDAFENGASFTMTRGGEVPKPKYSEEQCFNVVNVKYVRLLTRSSGVLQCTKTFLC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02017 354 Pfam Pectate lyase 91 271 IPR002022 -
Viun2g02017 354 SUPERFAMILY Pectin lyase-like 3 310 IPR011050 -
Viun2g02017 354 PANTHER PECTATE LYASE 18-RELATED 2 350 IPR045032 GO:0030570
Viun2g02017 354 PRINTS Pollen allergen Amb family signature 51 76 IPR018082 -
Viun2g02017 354 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Viun2g02017 354 PRINTS Pollen allergen Amb family signature 152 173 IPR018082 -
Viun2g02017 354 PRINTS Pollen allergen Amb family signature 294 318 IPR018082 -
Viun2g02017 354 PRINTS Pollen allergen Amb family signature 232 251 IPR018082 -
Viun2g02017 354 PRINTS Pollen allergen Amb family signature 325 348 IPR018082 -
Viun2g02017 354 PRINTS Pollen allergen Amb family signature 88 104 IPR018082 -
Viun2g02017 354 SMART amb_all 80 277 IPR002022 -
Viun2g02017 354 Gene3D - 3 347 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02017 Viun-Chr2 28589635 28591035 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02017 34 281 Polysaccharide Lyase AT5G09280 68.952 6.76e-138 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02017 K01728 - gmx:100780437 655.595