Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01999 ATGAATCATCGAACTTTCCAAGACAACATGATGTTCATGTCTCAGTTATACCCCGCCGATGCACCATACACTCAAATAATTGCTCAACAAGGGGAGAGCAAGAAGCCGAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGAGAGAACGGTGCCTCCGAAGCCAACAGGAAGAGGAAGCTCAGTGCGGAGCAGGTTAATCTACTTGAGCAGAACTTCGGAAATGAGCATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTTGGTCTGGACCCTCGACAAGTCGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCAAACCTTAAAAAATCCCATGAAGCCAACTTGCTCGAGAAATGTCGATTGGAGACCGAGGTATTGAAGCTGAAAGATCAACTTTGTGAGGCGGAGAAGGAGATTCAGAGGCTGGTGGAGAGTGGTGAAAGAGTTCCGAGTAACAGCGCAAGCTCGTCGCAGTCACAATCACAATCTATGGAAGCGGTGGACCCAGCATTGTTTGGGGTGTTCGGAGTTGATGGATATGATGATGATGTGTTTTACGCGCCCGAGACTCACTGCATCAACGCCTTGGAATGGATTAATCTGTATATGTAA 651 0.47 MNHRTFQDNMMFMSQLYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASEANRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEANLLEKCRLETEVLKLKDQLCEAEKEIQRLVESGERVPSNSASSSQSQSQSMEAVDPALFGVFGVDGYDDDVFYAPETHCINALEWINLYM 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01999 216 MobiDBLite consensus disorder prediction 159 176 - -
Viun2g01999 216 CDD homeodomain 56 112 IPR001356 GO:0003677
Viun2g01999 216 MobiDBLite consensus disorder prediction 45 61 - -
Viun2g01999 216 Gene3D - 47 120 - -
Viun2g01999 216 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Viun2g01999 216 MobiDBLite consensus disorder prediction 28 61 - -
Viun2g01999 216 MobiDBLite consensus disorder prediction 157 176 - -
Viun2g01999 216 Coils Coil 103 130 - -
Viun2g01999 216 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Viun2g01999 216 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Viun2g01999 216 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Viun2g01999 216 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Viun2g01999 216 Coils Coil 51 71 - -
Viun2g01999 216 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Viun2g01999 216 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Viun2g01999 216 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 30 176 IPR045224 GO:0003700
Viun2g01999 216 SMART HOX_1 54 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01999 Viun-Chr2 28470439 28472384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01999 1 216 Homeobox Transcription Factor Family AT4G36740 58.296 1.98e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Viun2g01999 Homeodomain 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01999 K09338 - gmx:100809616 330.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01999 2 28470439 28472384 Viun2g01999 2 28470439 28472384 ECH
Viun2g01999 2 28470439 28472384 Viun3g03710 3 44041942 44043620 PCT