Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01997 ATGCACACAAGCAAAGATAAAAGGGTCACAGAAATAACAACCAAAAGCCCCCTTCTCCATCCCATACTCCACTTTCAAGCTTCAACGATTCCTCTTCTCCATTATTCACATCACAGAGCCCAACAAGGTCACACCGCAACACCTTCTGGTAGTCCTCACCAAGCGATGAGAGTTCCCGTTCCCTCATCCCCACAGGCTAACCCAAAACCCACTAATAACCTACTCCGTACCATTGCCCTTCCCAACCTCAACACCACGGGCCTCTGCTACGAGCCCACCTCTGTCCTCGACCTGTGCCGAAGCCCCAGCCCGGGCTCCGAAAAGCCCACCGATCACGCAGTTGTGGTCACGGACTCCCAAGATTGTCTGGACCTGGACGACCATGCGTTGCACAACTTGGATTGGGACTCCATCATGAAGGACTTGGGCTTACACGATGACTCAGGTACTCCCCTCTTGAAGACTATTCCCCACCCCGACAACAACAATAACAACCCATGCGACGACTTCACCATCGCACCCTTCGATCACGCCCTTGAATTCTCCACTCTCTCCGACATCTACTCCAGCCAAAACCTCGCCTTCGATTTTAACCACCTCGTTCACGACTTCAGCAACCACCACCACAACAACGGCTTCGATTTCATCGAAGAGCTCATCCGCGCCGCGGATTGCTTCGACACCAAGCAGTTACACGTCGCACAGGTGATATTGGAGCGGCTCAATCAACGGCTACGATCCCCCGTGGGAAAACCCCTCCAACGCGCAGCGTTTTACTTCAAAGAAGCTCTCCAGTCCCTTCTCTCCGGTTCGAACCGGACGCCCAGGATTTCCTCGCTGGTGGAAATCGTGCATGGCATCAGAACCTTCAAGGCCTTCTCCGGAATCTCGCCGATCCCAATGTTCTCGATCTTCACCACCAACCAGGTGGTTCTCGATCACGCTGCGTGCTCCTTCATGCACGTCATCGACTTCGACATCGGCCTCGGGATCCAATACGCTTCTCTCATGAAGGAGATAGCGGAGAAGGCCACGGAATCGCCGTCTCTCCGAATCACCGCCGTCGTTCCCGAAGAGTACGCCGCCGAGAGCACCCTGGTACGCGAAAACCTGGCGCAGTTCGCTCTCGAACTCAGGATTCGTGTCCAGGTCGACTTCGTGCCGCTCCGAACCTTCGAGACGCTATCGTTCAAGGCAGTGAAGCTCGTCGATGGCGAGAGCACCACCGTGCTCCTTTCGCCAGTGATTTTCCGCCACCTCGAAAATTCTGCCGGGTTCTTGGCGAACTTGCGGGTGGTCTCTCCCAGCGTGGTGGTTTTGGTGGATGGCGAGGGGTGGGCGGATATGGCCACAGCGGCAGCCTCGTCGTTCCGCCGCGGCGTTGTGAGCAGTTTGGAGTACTACTCGATGATGTTGGAGTCGCTGGATGTGTCGACGGCTGCGGGAGGAGGGGAGTGGGTGAGGAGAATCGAGATGATGCAGCTGCGACCGAAGATTTTGGCGGCGGTGGAGAGTTCATGGCGGCGAGTGCCACCGTGGAGGGAGGCCTTTTACGGCGCCGGATTGAGGCCGGTTCAGTTGAGCCAGTTTGCGGATTTCCAAGCAGAGTGCTTGTTGGCGAAGTCGCAAATCAGAGGCTTCCACGTGCAGAAACGTCAGAACGAACTTACACTGTTCTGGCATGACAGGGCCATGGTTTCCTCGTCAGCTTGGCGGTTTTAG 1722 0.561 MHTSKDKRVTEITTKSPLLHPILHFQASTIPLLHYSHHRAQQGHTATPSGSPHQAMRVPVPSSPQANPKPTNNLLRTIALPNLNTTGLCYEPTSVLDLCRSPSPGSEKPTDHAVVVTDSQDCLDLDDHALHNLDWDSIMKDLGLHDDSGTPLLKTIPHPDNNNNNPCDDFTIAPFDHALEFSTLSDIYSSQNLAFDFNHLVHDFSNHHHNNGFDFIEELIRAADCFDTKQLHVAQVILERLNQRLRSPVGKPLQRAAFYFKEALQSLLSGSNRTPRISSLVEIVHGIRTFKAFSGISPIPMFSIFTTNQVVLDHAACSFMHVIDFDIGLGIQYASLMKEIAEKATESPSLRITAVVPEEYAAESTLVRENLAQFALELRIRVQVDFVPLRTFETLSFKAVKLVDGESTTVLLSPVIFRHLENSAGFLANLRVVSPSVVVLVDGEGWADMATAAASSFRRGVVSSLEYYSMMLESLDVSTAAGGGEWVRRIEMMQLRPKILAAVESSWRRVPPWREAFYGAGLRPVQLSQFADFQAECLLAKSQIRGFHVQKRQNELTLFWHDRAMVSSSAWRF 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01997 573 Pfam GRAS domain family 216 572 IPR005202 -
Viun2g01997 573 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 200 566 IPR005202 -
Viun2g01997 573 MobiDBLite consensus disorder prediction 40 72 - -
Viun2g01997 573 ProSiteProfiles GRAS family profile. 206 572 IPR005202 -
Viun2g01997 573 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01997 Viun-Chr2 28454570 28456717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01997 123 573 GRAS Transcription Factor Family AT4G36710 54.641 1.21e-165 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Viun2g01997 GRAS 2.6e-79 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01997 - - gmx:100807470 870.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01997 2 28454570 28456717 Viun2g01997 2 28454570 28456717 ECH
Viun2g01997 2 28454570 28456717 Viun3g03705 3 43962947 43965119 PCT