Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01989 ATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGTGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAACCCACGACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCGTGGAAGTTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAACCGACGTGCGTTCACCACGATCCTTCTAGAGCTTTGGGGGATCTCACTGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACCCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGCTGCAAAGGCTAGTCCCGAGTCAGATTCGAAGGCTGTAACCGGTGATTCGTCGCCTCCGGCGGCTGCAGCTGCGGCTACGCCTCCACCGCCTTCTGCTCCGCCGGCTAGTTCTAAGTCAAACAGTGTTGTTGTATCGTCGTCTGCTTTGCAGACACCAAATCCAGAGTTGCCAGAAAATTCCCCACAAGTCATAGAAGAACCGCAGGCCAATCCTGCTGTGAGTGGAAGCTGTAGCAGCTCCAGTACCAGTACCAGCACCACTAGCTCAACTAGCAACAGCAATGGCGGTGCTAGCAGCAGTGTATTTGCAAGCCTGTTTGCTTCATCAACAGCAACAGCATCGGCAACTGCGAGCCTCCAATCTCAAACACCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCAGATCATCCAGCAGACCTCTCAAGGCCTTCATCTTCGGAGCCCATTTCTCTGTGCCTTGCTACCAATCACGGGTCATCCATTTTTGGAACAGGATTGCAGGAGTGCCGTCAATATGCCCCGCCGCCACAGCCAGCCATGTCTGCCACTGCTTTGCTACAGAAAGCCGCCCAAATGGGTGCAGCTGCCACAAATACCTCTTTTCTTCGCGGATTAGGCATAGTGTCTTCTGCTTCAACCTCATCAGGTCAGCAAGATAGTTTGCAATGGGGTCAGCAGCCAGGGGAACCGGAGGGTGCCTCAGTTCCTGCAGGTCTTGGACTCGGGCTTCCCTGTGATGGCAGCTCTGGACTGAAGGAGTTAATGATGGGGACACCCTCTGTGTTTGGTCCAAAACAGACCACCCTTGATTTTCTCGGGCTGGGAATGGCTGCAGGGGGCAACCCCGGTGGAGGCTTATCGGCACTGATCACCTCAATTGGTGGCAGTCTGGATGTTACTGCTGCTGCAGCAGCAGCAGCATCCTTTGGTAATGGAGAATTCCCTGGCAAGGATATTGGGAGGAGTACTTGA 1578 0.5336 MPVDLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTAAKASPESDSKAVTGDSSPPAAAAAATPPPPSAPPASSKSNSVVVSSSALQTPNPELPENSPQVIEEPQANPAVSGSCSSSSTSTSTTSSTSNSNGGASSSVFASLFASSTATASATASLQSQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGLQECRQYAPPPQPAMSATALLQKAAQMGAAATNTSFLRGLGIVSSASTSSGQQDSLQWGQQPGEPEGASVPAGLGLGLPCDGSSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGSLDVTAAAAAAASFGNGEFPGKDIGRST 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01989 525 MobiDBLite consensus disorder prediction 415 441 - -
Viun2g01989 525 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Viun2g01989 525 FunFam protein indeterminate-domain 12-like 40 108 - -
Viun2g01989 525 MobiDBLite consensus disorder prediction 415 429 - -
Viun2g01989 525 Gene3D Classic Zinc Finger 115 195 - -
Viun2g01989 525 MobiDBLite consensus disorder prediction 9 30 - -
Viun2g01989 525 Gene3D Classic Zinc Finger 41 107 - -
Viun2g01989 525 MobiDBLite consensus disorder prediction 191 297 - -
Viun2g01989 525 SMART c2h2final6 102 132 IPR013087 -
Viun2g01989 525 SMART c2h2final6 61 83 IPR013087 -
Viun2g01989 525 SMART c2h2final6 137 157 IPR013087 -
Viun2g01989 525 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Viun2g01989 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 483 IPR031140 -
Viun2g01989 525 MobiDBLite consensus disorder prediction 1 43 - -
Viun2g01989 525 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Viun2g01989 525 MobiDBLite consensus disorder prediction 192 214 - -
Viun2g01989 525 MobiDBLite consensus disorder prediction 236 297 - -
Viun2g01989 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01989 Viun-Chr2 28420880 28424869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01989 1 525 IDZ Gene Family AT5G66730 60.073 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g01989 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01989 K25869 - gmx:100806404 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01989 2 28420880 28424869 Viun2g01989 2 28420880 28424869 ECH
Viun3g03698 3 43929997 43932974 Viun2g01989 2 28420880 28424869 ECH
Viun2g01989 2 28420880 28424869 Viun3g03698 3 43929997 43932974 PCT