Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01979 ATGTCTTCCCCTCCTCAAGACAGTTCTTCAGATAATAATGAAAAACCTGATGATTCTACCCCAGATAACAGCACTCCGGACAACAGCACCCCCGATGACGCTGACAACTCATCTTCACCACCTTCAAATTCATCACCGCCACCATCATCACCACCACCTTCATCGCCACCTCCATCTCCGCCACAATCATCATCATCTCCATCTCCGCCACCCCCATCAGAAAAGTCCTCTCCTTCCCCTCCAACATCAACCAATCCAACCCCGCCATCACCCAATACTTCCCCACAGACACCTTCTCGACCCACTTCATCACACTCTCCTCCCACCTTTAAATCACCAACTCCTCCACACAAATCATTGCAACCTCCACCCGCTTCAAAAAATAGTGGCAGCGGCAGTAGTGGTAAACATGGAAAAAGCGAGAGCAGTAATCGTGGCAGCCAAGATAACAGTAAAGCCATAGTTGGAGCAGTGCTTGGGGTGGGAAGCGTGCTTCTTGTTTTGGTCATCGTCTGCGTTATCTGTTCCAGGAAGAAGAAAAAGAAGAGAATGTACTATTATGGAGAGCAATCACTCGGAAAAGGGAATAATAATTATTACAATAGTGGTGGGCAACACCCGGGTTATTACGGAGGTCCACACGGGGACCATGTTGTGAGGATGCAAAATGGAATGGGTATGGGTCCCGGTGGTGGTGGTGGTGGTGGAGGTGGGTGGGGTGCACCTCCTCCGATGATGCATAGTGCTGATATGAGCTCGAACTACTCGACGGGACCACCCCCTTTGCCTCCTCCGTCGCCAACCCTTGCTCTAGGCCTCAAAGGTGGCACCTTTACTTATGAGGAACTAGCTGCTGCCACCAATGGATTCGCTGAGTCAAAATTGATAGGACAGGGTGGGTTCGGTTATGTCCACATGGGTGTGTTGCCTAATGGAAAGGAAGTGGCAGTTAAGAGTCTAAAAGCAGGAAGTGGACAGGGAGAACGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGTGTCCATCATCGCCATCTTGTGTCACTCGTTGGATACTCTATTTCTGGTGGCCAGAGAATGTTGGTCTATGAATTTATTCCCAATAATACCTTGGAATATCACCTTCATGGAAAGGGAAGGCCTACAATGGATTGGCCTACCAGAATGCGAATTGCAATAGGAGCAGCCAAAGGACTCGCTTATCTTCATGAAGATTGTCATCCTCGTATAATCCATCGTGATATTAAAGCAGCGAATGTCCTCATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACCACCGATAATAATACTCATGTATCGACTCGAGTCATGGGAACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCTGACGTTTTCTCATTTGGGGTGATGCTATTGGAACTCATAACTGGGAGGCGACCTGTGGATCACACAAGTGCCATGGACGACAGCTTAGTAGATTGGGCTCGACCACTACTGAATCGTGGATTGGAAGAGGATGGCAATTTTGGAGAGTTGGTTGATCCATTCTTGGAGGGAAACTACAATCCTCAAGAATTGACTAGGATGGCAGCTTGTGCTGCTTCTAGCATTAAACATTCCTCCAAGAAACGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTGTCGCTGGATGATTTGAAAGATGGGGTGAAGGTACCGCAGAGTAATGCTTTTAATTCTTCATCCGGGTCAGATCAGTATGATACAATGCAGTACAATGCAGACATTGAAAAGTTTAGAAAGGCAGTCTTTTCTAGCCAGGAATATGGCATGAGCAGTGGTGGCTCTAGTAGTGAAGTGAGCCAGAAACAACGGCTTTAG 1899 0.4702 MSSPPQDSSSDNNEKPDDSTPDNSTPDNSTPDDADNSSSPPSNSSPPPSSPPPSSPPPSPPQSSSSPSPPPPSEKSSPSPPTSTNPTPPSPNTSPQTPSRPTSSHSPPTFKSPTPPHKSLQPPPASKNSGSGSSGKHGKSESSNRGSQDNSKAIVGAVLGVGSVLLVLVIVCVICSRKKKKKRMYYYGEQSLGKGNNNYYNSGGQHPGYYGGPHGDHVVRMQNGMGMGPGGGGGGGGGWGAPPPMMHSADMSSNYSTGPPPLPPPSPTLALGLKGGTFTYEELAAATNGFAESKLIGQGGFGYVHMGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGAAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDHTSAMDDSLVDWARPLLNRGLEEDGNFGELVDPFLEGNYNPQELTRMAACAASSIKHSSKKRPKMSQIVRILEGDVSLDDLKDGVKVPQSNAFNSSSGSDQYDTMQYNADIEKFRKAVFSSQEYGMSSGGSSSEVSQKQRL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01979 632 MobiDBLite consensus disorder prediction 22 40 - -
Viun2g01979 632 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 160 609 IPR047117 -
Viun2g01979 632 MobiDBLite consensus disorder prediction 1 149 - -
Viun2g01979 632 FunFam proline-rich receptor-like protein kinase PERK1 268 365 - -
Viun2g01979 632 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Viun2g01979 632 ProSiteProfiles Protein kinase domain profile. 290 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01979 632 MobiDBLite consensus disorder prediction 224 265 - -
Viun2g01979 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Viun2g01979 632 MobiDBLite consensus disorder prediction 108 122 - -
Viun2g01979 632 Gene3D Transferase(Phosphotransferase) domain 1 366 577 - -
Viun2g01979 632 Gene3D Phosphorylase Kinase; domain 1 270 365 - -
Viun2g01979 632 SUPERFAMILY Protein kinase-like (PK-like) 269 563 IPR011009 -
Viun2g01979 632 Pfam Protein tyrosine and serine/threonine kinase 293 496 IPR001245 GO:0004672|GO:0006468
Viun2g01979 632 SMART serkin_6 290 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01979 632 PRINTS Proline rich extensin signature 19 31 - -
Viun2g01979 632 PRINTS Proline rich extensin signature 85 102 - -
Viun2g01979 632 PRINTS Proline rich extensin signature 40 61 - -
Viun2g01979 632 PRINTS Proline rich extensin signature 65 81 - -
Viun2g01979 632 MobiDBLite consensus disorder prediction 41 96 - -
Viun2g01979 632 FunFam Proline-rich receptor-like protein kinase PERK1 366 574 - -
Viun2g01979 632 MobiDBLite consensus disorder prediction 123 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01979 Viun-Chr2 28335103 28340289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01979 92 629 Trihelix Transcription Factor Family AT1G70460 48.723 2.72e-154 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Viun2g01979 PK_Tyr_Ser-Thr 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01979 - - gmx:100777163 803.127