Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01978 ATGGGGGACTTCAACAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCATCCGACTGGTCTCACAGCGAACCTGCTGAAGCTCTTCGAGCCCAGGCCCCTGGAATACAAACCGCCGCCGGAGAAGCGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGACCAAATTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTGTTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCACATAATGATCCAAATGTGTCTGGAGATCCATACAAGACATTGTTTGTGGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTACAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTCGTTGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGTCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAACGGCATTCTGGGAGGGAGCAACAACAGTCCCGTTCTGAAGAACCAAGAGCGCGAGAGGACCGACATGGTGATAGGGACAGGGAAATATCACGTGAAAAAGGTAGGGATAGAGATAGAGATCGGGAGCGATCACGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGACACCACAGAGACAGAGACAGGACAAGAGACAGGGATAGGGATAGAGATAGAGATCGTGGACGTGATCGAGATAGGGCAAGGGATCGTGACAGGGATAGGGACCGTGATCGACACCGTGAAAGGGATAGAGATTATGATGTCGGGGATACTGATCGGCGTTCACGTGATAGGGAGTCTGAATATGATCGTGTAGAATCTAAACATGAGAGGGACCAACATGGAGAAAGGAACCGTGACTATGAGCCTGAGGATGATCGTGGTAGGCATAGCCAGTATGAGCACGGACGTCGACATGCTGACCCTGATCATGACCCTGAGCAGTATGACTATCATCATGGAGATGACCGTGGTGATCATTACAATCAGTACCATGACCATGATAGGATGGAAGATGACTACCATGTAGGACGTGCAACATCTGAATCACATGAAAAGGAGAAAAGTCATGGTACAGACCGTGAATATCGTCGCTCAGAGAGATCTCATTCCCGGGAGTATGATTACTAG 1428 0.4853 MGDFNNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPXEYKPPPEKRKCPPLTGMAQFVTKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRAREDRHGDRDREISREKGRDRDRDRERSREHSHERVRDRDYREDRHHRDRDRTRDRDRDRDRDRGRDRDRARDRDRDRDRDRHRERDRDYDVGDTDRRSRDRESEYDRVESKHERDQHGERNRDYEPEDDRGRHSQYEHGRRHADPDHDPEQYDYHHGDDRGDHYNQYHDHDRMEDDYHVGRATSESHEKEKSHGTDREYRRSERSHSREYDY 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01978 476 MobiDBLite consensus disorder prediction 245 476 - -
Viun2g01978 476 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 45 133 IPR022023 -
Viun2g01978 476 CDD RRM_snRNP70 141 231 IPR034143 GO:0030619
Viun2g01978 476 Gene3D - 129 255 IPR012677 -
Viun2g01978 476 FunFam U1 small nuclear ribonucleoprotein 70 kDa 129 254 - -
Viun2g01978 476 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Viun2g01978 476 SMART rrm1_1 143 216 IPR000504 GO:0003723
Viun2g01978 476 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 213 IPR000504 GO:0003723
Viun2g01978 476 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 63 293 - -
Viun2g01978 476 SUPERFAMILY RNA-binding domain, RBD 130 242 IPR035979 GO:0003676
Viun2g01978 476 MobiDBLite consensus disorder prediction 224 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01978 Viun-Chr2 28326601 28331380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01978 144 190 C2H2 Transcription Factor Family AT2G19380 42.553 2.60e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01978 K11093 - gmx:100814484 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01978 2 28326601 28331380 Viun2g01978 2 28326601 28331380 ECH