Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g01976 | ATGGAGACCAAAGACAAAATGAATAATGAAGAACTTTCTGTGGAGTCTCCAACTTCGGTTCTCGAAGATGAGGATGTTTGTGCCCCCAAAGATGAACTTAAATTGGAGGAAGAGTTAATTGCTGATGTCATAGACGATGGCTCGTCTCTTGTATCGAAAACCATGGCGGAGGAGGAAGTGAAGTTACTTAATGCTAGGATAAAGGAAGAGGAGATGCAGTGCGAGGAGGCACCTGACCTCAACGACAGACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAACTGTACTCTGAATTTTTGCTGGAGAAAATGGATGACATCGCACTTAATGTGGGTGAACAAGTGAAAGAGGAAGAGGAAGAGAGCAAACCTTCTGCAAAGAGGGGCAGGGGATCGAAAAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCTAAAAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGGGACTATAGATATGAAAATGACTGAGGAAGAAAGAGTTCAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGAGGAGAATTGAAGCCTTATCAACTGAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACGATTGGATTCCTCTCGCATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTTCCAACAATTATCTACCATGGTAACAAGAAGGAGAGAGATGAGATCCGAAAGAAATACATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTCATAACTTCTTACGAGATTGCATTATATGATGCCAAGAAATATTTGAGGCATTACAGTTGGAAATATCTCGTTGTTGATGAGGGACACAGGCTAAAAAATTCACAATGCAAATTAGTGAAGGAGCTGAAATACATAACTGTTGAAAACAAGATTCTTCTAACTGGAACTCCTCTTCAGAACAACTTGGCTGAACTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAGTTTGAGTCATGGTTTAATCTGTCAGTGAAGGGCAATAATGAAGCAACCAGGGAAGAACTGGAAGAGAAACGAAGATTCCAAGTAGTAGCAAAGCTCCATGCTATTCTTCGACCCTTTCTTTTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCAAAGAAAAAAGAGATTATTCTCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACGTTGGGAAACTATTTAAAAGAGAAGATGTCAAGCGGACGCCCTCTTCCTGGAAGTTTGGTTCGTAATTTGGCTATTCAGCTTAGGAAAGTGTGTAACCATCCTGATCTTCTAGATTCAGCTTGTGATGATACATCTTTCTATCCTCCTGTAAATGAGATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAAACTGGATGAGAGGAAACGACAGCTCCAGGACTTCAACGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACCAGGGCTGGTGGATTGGGAATCAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAGGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATGTGTACCGGCTGTCAACTGCTCAATCTATAGAGGATCGCATGCTGAGAAGGGCTTTCAGCAAATTGAAGCTTGAACATGTAGTGATTGGGAAAGGACAGTTTCATCAAGAGCGTAAAGCTGTCAATACGGATGAGATAGAGGAAGAGGATGTTTTGGCATTGCTTCGTGACGATGAAACAGCTGAAGATAAAATGATACGAACAGATATTAGTGATGAAGACCTGGAGAAGGTCTTGGATCGCAGTGATCTTATCGTGAACAACAAAGGTGAAGCTCCATGCAGTTCCTTTCCTCTTAAAGGTCCAGGGTGGGAGGTGGTGATTCCAACTGCGAGTGGAGGTGTGCTCTCTACTCTCAACAGTTAG | 2271 | 0.4148 | METKDKMNNEELSVESPTSVLEDEDVCAPKDELKLEEELIADVIDDGSSLVSKTMAEEEVKLLNARIKEEEMQCEEAPDLNDRQFNKLDELLTQTKLYSEFLLEKMDDIALNVGEQVKEEEEESKPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEGTIDMKMTEEERVQKEQKELMPLLTGGELKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPTIIYHGNKKERDEIRKKYMPRTIGPKFPIVITSYEIALYDAKKYLRHYSWKYLVVDEGHRLKNSQCKLVKELKYITVENKILLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSVKGNNEATREELEEKRRFQVVAKLHAILRPFLLRRMKSDVEIMLPKKKEIILYANMTEHQKNLQDHLVNKTLGNYLKEKMSSGRPLPGSLVRNLAIQLRKVCNHPDLLDSACDDTSFYPPVNEIVEQCGKFHLLDRLVQRLFARNHKVLVFSQWTKVLDIMDYYFSEKGFEVCRIDGSVKLDERKRQLQDFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIEDRMLRRAFSKLKLEHVVIGKGQFHQERKAVNTDEIEEEDVLALLRDDETAEDKMIRTDISDEDLEKVLDRSDLIVNNKGEAPCSSFPLKGPGWEVVIPTASGGVLSTLNS | 756 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g01976 | 756 | PANTHER | SNF2/RAD54 HELICASE FAMILY | 56 | 696 | - | - | |
Viun2g01976 | 756 | Gene3D | - | 427 | 726 | IPR027417 | - | |
Viun2g01976 | 756 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 203 | 371 | IPR014001 | - | |
Viun2g01976 | 756 | MobiDBLite | consensus disorder prediction | 116 | 146 | - | - | |
Viun2g01976 | 756 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 423 | 713 | IPR027417 | - | |
Viun2g01976 | 756 | SMART | ultradead3 | 187 | 382 | IPR014001 | - | |
Viun2g01976 | 756 | CDD | SF2_C_SNF | 505 | 639 | - | - | |
Viun2g01976 | 756 | Coils | Coil | 53 | 73 | - | - | |
Viun2g01976 | 756 | Pfam | Helicase conserved C-terminal domain | 522 | 629 | IPR001650 | - | |
Viun2g01976 | 756 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 519 | 687 | IPR001650 | - | |
Viun2g01976 | 756 | Gene3D | - | 159 | 420 | IPR038718 | - | |
Viun2g01976 | 756 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Viun2g01976 | 756 | SMART | helicmild6 | 545 | 629 | IPR001650 | - | |
Viun2g01976 | 756 | FunFam | Chromatin complex subunit A 106 | 431 | 660 | - | - | |
Viun2g01976 | 756 | FunFam | ATP-dependent DNA helicase DDM1 | 185 | 430 | - | - | |
Viun2g01976 | 756 | Pfam | SNF2-related domain | 194 | 493 | IPR000330 | GO:0005524|GO:0140658 | |
Viun2g01976 | 756 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 171 | 421 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g01976 | Viun-Chr2 | 28310552 | 28316717 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g01976 | 177 | 678 | RAD5 or RAD16-like Gene Family | AT3G16600 | 23.817 | 1.64e-32 | 132 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SNF2 | Viun2g01976 | SNF2_N | 6.2e-63 | CL0023 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g01976 | K19001 | - | gmx:100777687 | 1278.85 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Viun2g01976 | 2 | 28310552 | 28316717 | Viun2g01976 | 2 | 28310552 | 28316717 | ECH |