Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01965 ATGGGACCCTGTACATGTGGCACCTCCCACACCCAAACCACCTCCTTCTCCATGCCTTTCTCAGTCACAAACCATAAACAACCTTACCAAGATTCCGACATTTACGATTATTCCTTCTCCTCCTCGTCTTCTTCTTCCTCTTCCGTTGTTGACTGCACCCTCTCCCTCGGTACCCCATCCACCCGTTTCTCCCAAGACCAGGAAAAACCTACTCGCCACCACCAACGTACCTCCGTTTCCAACTTCTGTTGGGACTTACTACAATCCAAACACAGCCCTCAATCCCAAACCAAATCCTCCAGAACCCCCAATACCACCTCAAACACCGACCCTCTCATCGCTCGCCGCTGCGCCAATTGTGACACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGAGGCCCCAAGTCACTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAGAGAAGGGCGAGTGCCGCGGCTGCACCGCCGCAGCAGGCTTCTGGCGGCATGATGGAATCGGCGCAGGTGTACAACAACTCCTGGTACGCACACCCGCAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGGATGGGGAGCGAGTTCTGTTTCGCGGATGACGGCGACCGAGACGCCGATAACGGCATTCCGTTTCTCTCGTGGAGACTCAACGTCGCAGACAGAACGAGCCTCGTCCACGACTTCACAAGATAA 702 0.5513 MGPCTCGTSHTQTTSFSMPFSVTNHKQPYQDSDIYDYSFSSSSSSSSSVVDCTLSLGTPSTRFSQDQEKPTRHHQRTSVSNFCWDLLQSKHSPQSQTKSSRTPNTTSNTDPLIARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAPPQQASGGMMESAQVYNNSWYAHPQSQKMQCFSPGMGSEFCFADDGDRDADNGIPFLSWRLNVADRTSLVHDFTR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01965 233 Gene3D - 113 173 IPR013088 GO:0006355|GO:0008270
Viun2g01965 233 SMART GATA_3 111 163 IPR000679 GO:0006355|GO:0043565
Viun2g01965 233 ProSitePatterns GATA-type zinc finger domain. 117 142 IPR000679 GO:0006355|GO:0043565
Viun2g01965 233 ProSiteProfiles GATA-type zinc finger domain profile. 111 147 IPR000679 GO:0006355|GO:0043565
Viun2g01965 233 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 114 153 - -
Viun2g01965 233 CDD ZnF_GATA 116 148 IPR000679 GO:0006355|GO:0043565
Viun2g01965 233 PANTHER GATA TRANSCRIPTION FACTOR 18 2 233 IPR044272 GO:0003700|GO:0009908
Viun2g01965 233 Pfam GATA zinc finger 117 151 IPR000679 GO:0006355|GO:0043565
Viun2g01965 233 MobiDBLite consensus disorder prediction 92 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01965 Viun-Chr2 28214382 28216001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01965 15 233 C2C2-Gata Transcription Factor Family AT3G50870 44.195 2.92e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun2g01965 GATA 5.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01965 - - gmx:100790571 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01965 2 28214382 28216001 Viun2g01965 2 28214382 28216001 ECH
Viun2g01965 2 28214382 28216001 Viun3g03677 3 43704997 43707008 PCT