Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01963 ATGGAAATGGGAGGCCAAGATAAGGAAATAGAGATACCAACAACAAGTTTAGGTTACAACCTTCCCAACCCAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACAGTTGGTGAAAGAAGCACCACCACCACTCATCATGATCATCATCATCATCATCAACAACTTCATCAACCTCACACATTAATCTTCAACGACCCACCTCACCATAATCTCTACCCACCACCACCTCCTCCTCTTGCACCTCGTCAACCTCATACTCTCACACCAGATCCAGATCTAACCACCCCAATTGCTCCCACATCGAATCCTCTAAGAACACTACACCCCCACACAACAACAATAGCACCAGCATCAACCTCAACCTCAACCTCAACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGACGGCTGCGGGGAGTTCATGGCAAGCGGCGAAGAAGGTACGCCAGAATCACTAAGATGCGCCGCGTGTGAGTGCCACCGCAACTTCCACCGGAAAGAGGTCGAGGGAGAGTTACAGCCGCAACAACCACCCCCACTGTCACTAGTACAGAACCACCACCAACAACAGCAACAGCAACAACATGTTCCCAATTATCACAGCTACTACCCCAACAAGCACAATGGGCATCTTCACTACCCTACACCCTCTCCTTCTTCCCTCCATCATCAGAGATTGGTTGGTAGCAGTGGCACACCGAGTTTGGTCCCCCCAGTGATGATGGCCTTTGGAGGCCCGGCCGAATCCTCAAGTGAAGATCTCAACATGTTTCAGTCCAACACCGGAGGAGCACAGTTATCAGTGCAGGCGCCGCTTTCTTCCAAGAAGAGGTTTAGGACTAAGTTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATTCAGAAACACAATGAACAAGAGGTACAGCAGTTTTGTTCTCAAGCGGGCGTAAAAAGACAAGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1050 0.4952 MEMGGQDKEIEIPTTSLGYNLPNPDSSSSSSKLSSPTVGERSTTTTHHDHHHHHQQLHQPHTLIFNDPPHHNLYPPPPPPLAPRQPHTLTPDPDLTTPIAPTSNPLRTLHPHTTTIAPASTSTSTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGELQPQQPPPLSLVQNHHQQQQQQQHVPNYHSYYPNKHNGHLHYPTPSPSSLHHQRLVGSSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQQFCSQAGVKRQVFKVWMHNNKKHPM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01963 349 FunFam Zinc-finger homeodomain protein 2 277 349 - -
Viun2g01963 349 Pfam ZF-HD protein dimerisation region 130 182 IPR006456 -
Viun2g01963 349 SUPERFAMILY Homeodomain-like 278 345 IPR009057 -
Viun2g01963 349 MobiDBLite consensus disorder prediction 191 215 - -
Viun2g01963 349 MobiDBLite consensus disorder prediction 226 245 - -
Viun2g01963 349 MobiDBLite consensus disorder prediction 70 87 - -
Viun2g01963 349 NCBIfam homeobox domain, ZF-HD class 289 346 IPR006455 -
Viun2g01963 349 MobiDBLite consensus disorder prediction 1 128 - -
Viun2g01963 349 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 131 182 IPR006456 -
Viun2g01963 349 Gene3D - 277 348 - -
Viun2g01963 349 MobiDBLite consensus disorder prediction 90 128 - -
Viun2g01963 349 MobiDBLite consensus disorder prediction 182 247 - -
Viun2g01963 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 113 346 - -
Viun2g01963 349 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 132 181 IPR006456 -
Viun2g01963 349 MobiDBLite consensus disorder prediction 16 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01963 Viun-Chr2 28186938 28191921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01963 96 346 ZF-HD Transcription Factor Family AT2G18350 45.098 4.59e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Viun2g01963 ZF-HD_dimer 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01963 - - vra:106776405 526.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01963 2 28186938 28191921 Viun2g01963 2 28186938 28191921 ECH
Viun3g03673 3 43637779 43639763 Viun2g01963 2 28186938 28191921 ECH
Viun2g01963 2 28186938 28191921 Viun3g03673 3 43637779 43639763 PCT