Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01957 ATGAGAATGGATATTGGTGAAGGGGAGGCCTTACTAAATCCCCGCTCCTTTAAGGTGCATGGTAAAATGTGCACAGAACTTGCAAAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGATTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAACACAATTGAAAAAGCCAGAGTACTTATGCAGCATTGCTCTGAATGCAGCAAACTCTACCTGGTTATGACAGGGGATACAGTACTCTCAAGATGCCTAAAGACAACACGATTATTGGAGAAAAGCTTAATCCAAATTCAGAACATGGTTCCTGTTATGTTGGCTGTGAAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCCGATGAAGAAGAGGCTGGGAGGGTTGTGAAAGAGGAGTTGCTCACTTCAACTTCAGATTCAGTCGAAGATTCTGAAGTTAATGCTCTCCAGTCTGTAGCATCGCGGCTGAAAATAACATCCCCGAAAGCCATCGTAACAGAGCAACGATCTATTAGGAAGTTGTTGGATAAACTTGGACCGCATGACCTGACAAAGAAAGAGATACTGAGATATCTTCTGCATCTACTGAAAAAGCATGCAAAGCTCCTGGTGGAAGAACATGAGGAGAGGGTCTATTCTCCCGAAGAACATGTTGAAACTGATAACTCTCGCCATTCTCTACGAAGCCATCATGTGGAATCAGACCAAAGCTTAAACTATGATCAGTATATAACTCACAGCAGTGAGTTAGGTGGAGTTGACCTCCCTGAGGAATATAAATGCCCAATATCCTCAAGGTTGATGTATGATCCTGTTATCATTGAATCAGGAGTAACATATGAAAGGATGTGGATAAAAAAGTGGTTTGATGGGGGTAATGATATATGCCCCAAAACCAGAAAGGCACTAATCCATACGGCTTTAACTCCAAATGTGGTCATGAAGGACTTAATATCAAAGTGGTGCAGAGAAAATGGAGTCTCCATTCCAGATCCTAGTAGGCATGCAGAAGATATTTCCACTTGGGAAGCTTCAAGCACTTCCATTAATAGTATAGGAAGTTATTTCAATGATTTCAACCCGCCAGTGGATCTTAGTAACATGTCAATTGGGTCACTTGATGCTAGTTTTAGTTCAGATGCCTCGCATGGTAGGGCCACTCGTGGCTCTATGCTGATCAGGAACAGTGACAATTCTGAAAGACATCAAGTTCATACAGAGATACATGATACTGATTTGATGCTCTTGCCTCAACTCGGTAATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGACCTCAAAGATCACTTGAAAAGCAATAGCCAAGCTTTTGTTTCTGTATCTGCAGAGAATTTCGTTGAACCACTCCTCAGATTTCTCAACAATGCATATGATCTGCGTGATTTTCAAGCATTGAAAGCTGGAACTCAGCTTCTGTTGGAGTTTGTGAACAACTGCAGAAATGGTAATACTAATTTGAATGAAGAGACGTTCATTATGTTGGCAAGTTTTCTTGATTCAGAAGCGACAGAAGAAATTCTTGCCATACTGGAAGAACTGTCAGGATGTTGGTATAATGCACCTAAAATTGCAGCATCCAGTGCTCTCAATTCTATTTTAAACATTCTTGATTCCGAAAACAAAGGTTTCCAACAGCAAGCTATTAGAATAATGTACAATTTGTCTTTCATTGGTGAAGTCTGTTCCCGCATGCTATCGCTCAAGTGCATCCCAAAATTGCTGCCATTTTTCAGTGACAGAAACCTTTTGAGATACTGCATACGTATACTGAAAAATCTTTGTGATACTGAAGAGGGTAGGATTTCTGTTGCTGAAACAAAGGGGTGCGTAAGTTCGGTTACTGAAATACTTAATACCGGCAATAATGAAGAACAAGAACATGCACTGGCAGTTCTAGTCTCTCTATGCTCTCATGTGGATTACTTGAAGTTAGTAATGAGTGAGCATGACAATATCATAATTTCTCTTTGCCTGATCTCCCAGAATGGAAACGACAAGGGAAAGAAAAGTGCATTGGAATTGATCCATCTTTTGGATGATGTCAAGATTGGTGACAATAAAGGTTGCTCTGAGCCAAATATCAGCAACTCTTGTGGAGATTCTAAGACTCACCCACCTGAAGAAAATAGACCACCGAAGAAATCCACGTTTCTGAAGAAACTATCACCATTCTCAAAGTCCAGTTCACATGGATCAAAATCCAAAAGAATACAATGA 2280 0.4061 MRMDIGEGEALLNPRSFKVHGKMCTELAKLVDRISRIVPDIEAARPGFSSGIESLCLLNNTIEKARVLMQHCSECSKLYLVMTGDTVLSRCLKTTRLLEKSLIQIQNMVPVMLAVKVSRIIHDLECTRFVLDPDEEEAGRVVKEELLTSTSDSVEDSEVNALQSVASRLKITSPKAIVTEQRSIRKLLDKLGPHDLTKKEILRYLLHLLKKHAKLLVEEHEERVYSPEEHVETDNSRHSLRSHHVESDQSLNYDQYITHSSELGGVDLPEEYKCPISSRLMYDPVIIESGVTYERMWIKKWFDGGNDICPKTRKALIHTALTPNVVMKDLISKWCRENGVSIPDPSRHAEDISTWEASSTSINSIGSYFNDFNPPVDLSNMSIGSLDASFSSDASHGRATRGSMLIRNSDNSERHQVHTEIHDTDLMLLPQLGNLQWDSQCKVIQDLKDHLKSNSQAFVSVSAENFVEPLLRFLNNAYDLRDFQALKAGTQLLLEFVNNCRNGNTNLNEETFIMLASFLDSEATEEILAILEELSGCWYNAPKIAASSALNSILNILDSENKGFQQQAIRIMYNLSFIGEVCSRMLSLKCIPKLLPFFSDRNLLRYCIRILKNLCDTEEGRISVAETKGCVSSVTEILNTGNNEEQEHALAVLVSLCSHVDYLKLVMSEHDNIIISLCLISQNGNDKGKKSALELIHLLDDVKIGDNKGCSEPNISNSCGDSKTHPPEENRPPKKSTFLKKLSPFSKSSSHGSKSKRIQ 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01957 759 Gene3D - 428 706 IPR011989 -
Viun2g01957 759 SUPERFAMILY RING/U-box 257 345 - -
Viun2g01957 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 342 IPR013083 -
Viun2g01957 759 PANTHER U BOX DOMAIN-CONTAINING 22 705 - -
Viun2g01957 759 Pfam Kinesin-associated protein (KAP) 482 657 - -
Viun2g01957 759 SUPERFAMILY ARM repeat 428 699 IPR016024 -
Viun2g01957 759 MobiDBLite consensus disorder prediction 715 759 - -
Viun2g01957 759 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
Viun2g01957 759 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Viun2g01957 759 CDD RING-Ubox_PUB 269 321 IPR045210 -
Viun2g01957 759 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01957 Viun-Chr2 28150759 28155379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01957 1 749 U-box Gene Family AT4G36550 37.582 1.42e-142 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01957 - - gmx:100775550 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01957 2 28150759 28155379 Viun2g01957 2 28150759 28155379 ECH
Viun3g03670 3 43554864 43560275 Viun2g01957 2 28150759 28155379 ECH
Viun2g01957 2 28150759 28155379 Viun3g03670 3 43554864 43560275 PCT