Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01956 ATGTCGTTGAAAAGCATAGTAAGAGAACTGAAGGAGATGAGAGATGGAATTGGTAGCATGTCAAAGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGGACAAAGTCATATGTTGCTCCAGATATCACTCTAACTTCACTTGAACCCATTCAGCAAGGGCAGTGGGCGAATTTACCCCCTGAGTTGCTTCTGGACATAATAAGTAGGGTGGAAGAGAGCGAGACTACGTGGCCCGCACGTGCCGTTGTTGTTCATTGTGGTTCAGTTTGTAAATCTTGGAGAGATGTTACCAAAGAAATTGCGAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGGCCTCGTGATTCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATATCTATTGTACATTGGCCTGGTGCCATCGGAGAACGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGAACAGACTTTATTGTGTCTTTGGTTGCAGATGATTTTTCTCGCTCCAGCAACACATATGTCGGAAAACTCAAGTCTAATTTTTTGGGTACCAAGTTCACTGTTTATGACAGCCAACCGCCACAGGGAGCTGCAATTCAACAAGATAGTGGGTCTAGTAGGAGATTTCATTCTAAGCAGTCATCTCCTAAAGTTTCAGCATTTAACTATGTTGTTGGCACCATTGCCTACGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCATTGTACCATGAACTCCATACCTATCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACATCCTTCCCTCAAATCATTGACAGGCCCTTTTCTCCCTCACCAGCACTAAAAGGAAAAGGTTCAAGTACAGATTTAAATAATGTAAACCTCCCTAAGCTAGCAGTACCTGGTCAAGGGTCATCTGAGCCCATGGTACTAAAAAATAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTCACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCCGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTCTGAGCAGCTTTGACACGAAACCAGCCTGTGAATGA 1245 0.4466 MSLKSIVRELKEMRDGIGSMSKRGVESRRWNGRTKSYVAPDITLTSLEPIQQGQWANLPPELLLDIISRVEESETTWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGPRDSPIQCFIRRNRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIVSLVADDFSRSSNTYVGKLKSNFLGTKFTVYDSQPPQGAAIQQDSGSSRRFHSKQSSPKVSAFNYVVGTIAYELNVLRARGPRRMHCTMNSIPISAIQEGGTAPTPTSFPQIIDRPFSPSPALKGKGSSTDLNNVNLPKLAVPGQGSSEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01956 414 Gene3D - 48 104 - -
Viun2g01956 414 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
Viun2g01956 414 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Viun2g01956 414 PANTHER TUBBY-RELATED 50 412 - -
Viun2g01956 414 Pfam F-box domain 55 100 IPR001810 GO:0005515
Viun2g01956 414 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Viun2g01956 414 MobiDBLite consensus disorder prediction 206 226 - -
Viun2g01956 414 CDD F-box_AtTLP-like 55 99 - -
Viun2g01956 414 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Viun2g01956 414 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Viun2g01956 414 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Viun2g01956 414 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Viun2g01956 414 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Viun2g01956 414 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Viun2g01956 414 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Viun2g01956 414 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Viun2g01956 414 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Viun2g01956 414 Pfam Tub family 116 409 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01956 Viun-Chr2 28146642 28149696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01956 1 414 TUB Transcription Factor Family AT2G18280 64.096 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Viun2g01956 Tub 1e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01956 K19600 - gmx:100798958 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01956 2 28146642 28149696 Viun2g01956 2 28146642 28149696 ECH
Viun3g03667 3 43530381 43538197 Viun2g01956 2 28146642 28149696 ECH
Viun2g01956 2 28146642 28149696 Viun3g03667 3 43530381 43538197 PCT