Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01940 ATGGCTCAGTCACCGCCTTATTATAACCGATTTCCTCAGACTCCAAACTCAACTAAGAAGGGACGTAGTGGCTACGAGCCATCGGACACTGAGACCGAGTGGCAAGAGATTCCACGCCACGAACGTGAAAGAAGAAACTTCACTTTACAACGGAACAAAAGCCCCATGGCACTACACAGAAGGCACCCTTCCAGGGTTGAACATGAAATCTCATCAGCTTCAACAACTTCAGCTCCACGTAGAAGACACAATAGCAAATCACCCTATAAGCTGCGCGTAGCAGAAGATGTTGCTGCTTCATCATCGCCGGTAACAGGTTTGGATACACGCAGAAATATCAGTCCCTTGCCGAGACCTGACCTTGGAAGAACTGTGTCCCCTTTCAGGGAGCAAAGAACTGAGAAGCCACACTACAAGAGATCAGTGACTGCTCCCAGGTTGAGGATTCAAGAGAGCAACCATGGGGGGATAATCAATGACACTGTTCTAAAGCAAAGAGAAGTTTCTCCTTTCAAAACGCCTTCGGTTGGAAAAATCAACGAAATGATAGCACAGGTGAAGCTATCTAACGATCCCAGAAGTGATTATTCATCAGTGCTTGAAAGCACTGATTCCATTCAACCGGGTGACCTTTTCTTTTCTCGTGAATGCAATGTCTTGCAAGGGAGGAATTCTTCGTTGCCGAAACGCATCCAACAGAGTGAGTATTTCAGTCCAATGCCAACGGTGAACTCCTCGAGAACCCCATCTGAAAGCAAAGGAAATAACAGTGATCTTAACATGAATATGAATATGGGTTTGAATTCTGCTGCCACAAGTAGAAAGGGCAGTGGCACTGGTAAGACAAGTAGTGTAACAAGCGAAGGTAGTGGAAAAACGACTGCAAGCATGAGGAAATTCACAGCTAACAGAAAAAAGAACCAGAAAGATACATGGTTTGCTTGCATGAGAACAGGTAACTGTAGAACCACTAGAAAATCTCCTGAACGTCGACCTATTGACGAATCTTCTTACATTGAGAGAGCAGTGGTAGTGGAAAGCCTCCCACAATTCTTGGCAGATAAGCACCAACCTGCTTCACTTAATGGCTTCATTTGCAACAGACAAGAAGCTCAACTTCTCAAGGAATTGGTGTCTCATGGATCTTGCCCTCATATTTTGCTCAAAGGACCCTCTGGTTCCGGGAAAAGAGAGCTAGCAATGGCTCTTCTTCGAGAAATATATGGTGATGCATGTTGCAATCTGTCTCATGATTTAAGACACTTCCCTATTCAGGACCAAAGGCTTAAGAAAGTCTCTGTCCCCATAACATCCAGTCCTCATCACATGGAGCTAGATGTAAACTCAGAACCTAATGCTAAATATGCTTTAATGGGATTAATCAAAGAAATTAGCAATATATATGCCATTGCCCCTGAAGTAAGCAATATTAATTTCAAGTCAGATTTTAAAGTAATAGTTCTTTATGATGTCCACAAAGCAGTAGATAACATCCAGCACATTATCAAATGGATCGTAGACCGCTATTCTGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATCATTGGACCTGTGAAAAATCGGTTCAAAACTGTACAACTTTATGCTCCTCAAACTCACGAAATTGTTGAGGTTCTTATGCAGATAGCAAAGAATGAGAATTTTGATCTGTCCATGAACTTTGCTGCTAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTCTTGAAGCATGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCAATTTCAGTTGTATGGGAGGAGATCGTAATAGAAGTTGCCACAGAGATTCTAGCTGATCCATCATTTTCACGCTTACTCTCAATTCGAGGGAAATTTCAAATGCTTCTCTTGGATTTTGTCCAGCCGAAATTGATCCTCCTGAAACTCGTAGAACATCTCCTAAAAAGAATTGATGCTAGCTTAAAAAGGGAGCTATACTACTGGCATGCCTATTATGACAGAAGACTCCCATCAGGAATAACAGCTTTACTAAAGTTAGAAGAATTTGTGGCCAAGTTCATGGGCATGTGCAGAAAAAACTCTGGCAATCGGCAATATGTGTAG 2121 0.422 MAQSPPYYNRFPQTPNSTKKGRSGYEPSDTETEWQEIPRHERERRNFTLQRNKSPMALHRRHPSRVEHEISSASTTSAPRRRHNSKSPYKLRVAEDVAASSSPVTGLDTRRNISPLPRPDLGRTVSPFREQRTEKPHYKRSVTAPRLRIQESNHGGIINDTVLKQREVSPFKTPSVGKINEMIAQVKLSNDPRSDYSSVLESTDSIQPGDLFFSRECNVLQGRNSSLPKRIQQSEYFSPMPTVNSSRTPSESKGNNSDLNMNMNMGLNSAATSRKGSGTGKTSSVTSEGSGKTTASMRKFTANRKKNQKDTWFACMRTGNCRTTRKSPERRPIDESSYIERAVVVESLPQFLADKHQPASLNGFICNRQEAQLLKELVSHGSCPHILLKGPSGSGKRELAMALLREIYGDACCNLSHDLRHFPIQDQRLKKVSVPITSSPHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVHKAVDNIQHIIKWIVDRYSDICKLVLCCEDDADIIGPVKNRFKTVQLYAPQTHEIVEVLMQIAKNENFDLSMNFAAKIATKSKQNLRKAIMALEACKAHNYPFSEEQPISVVWEEIVIEVATEILADPSFSRLLSIRGKFQMLLLDFVQPKLILLKLVEHLLKRIDASLKRELYYWHAYYDRRLPSGITALLKLEEFVAKFMGMCRKNSGNRQYV 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01940 706 FunFam Replication factor C subunit 3 350 541 - -
Viun2g01940 706 Gene3D - 603 696 - -
Viun2g01940 706 MobiDBLite consensus disorder prediction 233 296 - -
Viun2g01940 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 589 IPR027417 -
Viun2g01940 706 FunFam replication factor C subunit 3 542 600 - -
Viun2g01940 706 MobiDBLite consensus disorder prediction 1 140 - -
Viun2g01940 706 MobiDBLite consensus disorder prediction 24 49 - -
Viun2g01940 706 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 353 685 - -
Viun2g01940 706 Gene3D - 350 541 IPR027417 -
Viun2g01940 706 MobiDBLite consensus disorder prediction 1 23 - -
Viun2g01940 706 MobiDBLite consensus disorder prediction 125 140 - -
Viun2g01940 706 SUPERFAMILY post-AAA+ oligomerization domain-like 603 695 IPR008921 GO:0003677|GO:0006260
Viun2g01940 706 Gene3D - 543 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01940 Viun-Chr2 28046242 28050146 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01940 353 695 Core DNA Replication Machinery Family AT5G27740 38.905 5.89e-74 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01940 K10756 - gmx:100795321 1192.95