Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01922 ATGTTATCCAACAAGACCAAAAATCTTCGTTCATTTGCATCAGCTTCATCGTGGTTCGATGTGTACGCTGCGTTCTCCACGTTCATCATGCTCCTCAGAACTGCATTCAATGATCTCATACCCCGCCAGATTCGATCCTTTCTTGTCTCAAAGCTAGAAGCTTTTTTCAATAGCCAACCAAATAATCAAATATCTCTCCATATCAACGAGTTCTGGCGCAATGGGCGTGATGAAAATGAACTTTTCTTTGCAGCGCAGGAGTACCTCCCCACTAGGATTACCAGAACCTACAAATCACTCAAAGTTGGCAAACTAGAAAACGAAAAGCACCTGAATCTCGCAGTGGATTCAAGCGAAGAGGTGGTGGATGAGTTTGAAGGCACCAAGTTCACTTGGAAGCTGGATGAGAATTCCGAGGAAAACTCGCGCCATTCCCAGAAGCAAGCCTTTGTACTGAGCTTCAACGAGGGGAACAGAGAGAGAGTGTTGGATCGGTATATCCCACACATCCTTAAAACTCACGAGGCCATGAAAAGTGAGAAGAGGATTCTGGAGATCTATTCCTGGTCCCCTTATTATGAATGGACCGAGAGGGAGTTATCTCATCCTGCCACATTCGACACGCTGGCCTTGGATCCTGAGTTGAAGCAAGCTGTAGTTGATGATTTAGAACGGTTCTTGAAGAGGAAGGAGTTCTACAAGAAAGTGGGAAAGCCTTGGAAACGAGGGTACTTGCTGTATGGACCGCCGGGAACCGGAAAATCTAGCCTCATTGCAGCCATTGCCAATTACTTGAAATTCGACGTGTATGATTTGGATTTATCTTACATTGATTCTGATTCAGACCTCATGGAAGCCATGAGAGATGTATCTGGAAGTTCCATCTTGGTGATTGAAGACATAGATTGCAACAAAGAGGTGCATGTTCGATCAAAACCAGAACAAGATTCAGAGAGTGGTGAGGTTAGTGGGAAGTTTCGTCTGTCGAATTTGCTGAATTTCACCGATGGTTTAAGATCAGGCGGTGGAGAGGGGTGGCTTATAATATTCACTACTAATCACAAAGAGAAAATAGACCCGGCGTTGCTGCGCCCTGGTCGCATGGACATGCACATTCACTTGTCCTTTCTCAGTGGTAAGGCGTTTCCGGTTATGGCTTCGAATTATTTGGGCATTGAAGGAGATCATCCACTGGTTGAAGAGATCCAAGGAATGTTGGAGAAGACACAAGTTACCCCTGCAGTAGTAGCAGAGCATCTCATCAGAAATGAGGACCCTGACCTTGCTTTGGAAGCACTTGTTGAGTTTCTCAAACAACACTAG 1323 0.452 MLSNKTKNLRSFASASSWFDVYAAFSTFIMLLRTAFNDLIPRQIRSFLVSKLEAFFNSQPNNQISLHINEFWRNGRDENELFFAAQEYLPTRITRTYKSLKVGKLENEKHLNLAVDSSEEVVDEFEGTKFTWKLDENSEENSRHSQKQAFVLSFNEGNRERVLDRYIPHILKTHEAMKSEKRILEIYSWSPYYEWTERELSHPATFDTLALDPELKQAVVDDLERFLKRKEFYKKVGKPWKRGYLLYGPPGTGKSSLIAAIANYLKFDVYDLDLSYIDSDSDLMEAMRDVSGSSILVIEDIDCNKEVHVRSKPEQDSESGEVSGKFRLSNLLNFTDGLRSGGGEGWLIIFTTNHKEKIDPALLRPGRMDMHIHLSFLSGKAFPVMASNYLGIEGDHPLVEEIQGMLEKTQVTPAVVAEHLIRNEDPDLALEALVEFLKQH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01922 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 424 IPR027417 -
Viun2g01922 440 Gene3D - 373 440 - -
Viun2g01922 440 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Viun2g01922 440 SMART AAA_5 240 378 IPR003593 GO:0016887
Viun2g01922 440 PANTHER BCS1 AAA-TYPE ATPASE 23 438 - -
Viun2g01922 440 Gene3D - 194 372 IPR027417 -
Viun2g01922 440 CDD RecA-like_BCS1 219 374 - -
Viun2g01922 440 Pfam Domain associated at C-terminal with AAA 40 134 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01922 Viun-Chr2 27958732 27960282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01922 242 440 Calmodulin-binding Proteins AT3G56690 27.885 3.77e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01922 - K08900 gmx:100789094 583.563