Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01920 ATGGTAAAAAAGCATGGATTGTACTCCCACAACAGTCTTTCTTCTTTTAAATCAGCATCATCATGGTTCGAGGTGTATGCTGCCTTCTCCACACTCACGATTCTCCTCAGAACTGCAATCAATGATCTCATACCCCATCAGCTTCGATCCTACATCGTCTCAAAGCTAGAGGGCTTCTTCTGCAAATACCAACCAAGTAACAAAGCCTCTATCAAAATAAACCAATTTTGGGATGAAACTTGTGGAGAGCGCAATGAACTTTTCGAAGCTGCCCTCACGTACCTCCCCACCAAGATTACTCACACCTACAAATCGCTCAAAGTTGGCAGACGGCAAAACCAGAAACACCTTGAGCTTGCAGTGGATGGAGGTGATGATGTGGTGGACGAATTTGAAGGCGTGAAATACACTTGGAAACTGAATGAAGGGTCCAGGGAGGAGTCTATGAACAGGAAGAATAACTTTGTATTAACCTTCAACGAAAAACAGAGACAGAGGGTACTGGATCAGTATATCCCACATGTGGTTAAATCATATGAGGCCATGAAAAATGAGAGAAGGATTTTAAAATTGTATTCTTGGTTAGATGACTTTTGGAACGAAAGTGATCTATCACACCCTGCCACATTTGACTCACTAGCCTTGAGTCCTGAGTTGAAGAAAGATATAGTTGATGATTTGGATCGGTTCTTGAGGAGGAAGGAGCTTTACAAGAAAGTGGGGAAGGCTTGGAAGCGTGGCTACTTGTTGTATGGACCCCCCGGAACTGGAAAATCTAGCCTTATTGCAGCCATGGCAAACCACTTGAAATTCGATGTGTATGATTTGGAGCTTTCTTCCATCATCTCTAACTCAGACCTTATGAGATGCATGAAGGAAGCATCTAACCGTTGCATAATTGTGATTGAAGACATAGACTGCAACAAGGAGGTTCATGCAAGATCAAAACCAAATGGTTCTTCAGATGATCGAGATTCGGAGTCTGACAGTGAGGGTTCAAAGATGAAGTCAAAGAGGTTTACTCTGTCGGGTCTGCTTAACTACATGGACGGTTTGAGCACGAGTGGTGGAGAGGAGCGGATTATAATCTTCACCACTAACCACAAAGAGAAAATTGACCCAGCGTTGCTGCGCCCTGGTCGAATGGACATGCACATTCACATGTCCTTCCTCAAAGGCAAGGCCTTTCGAATGTTGGCTTCCAATTATCTGGGCATCGAAGGAGATCATCCACTCTTTCAGCAAATTGATGATTTGTTGGAGAAAGTAGAAATCACACCTGCAGTGGTAGGGGAGCAACTATTGAGATATGAGGATCCTCACCGTTGTTTGGAAGAACTTGTTCAATTTCTCCAACAAAAGGTCAAAGATAGTAATTGTGATGGAGTGGGGAGGGTTGTTTTCAGCAGGAGTTTTGACACCGATTCTCTTATTTGA 1437 0.4342 MVKKHGLYSHNSLSSFKSASSWFEVYAAFSTLTILLRTAINDLIPHQLRSYIVSKLEGFFCKYQPSNKASIKINQFWDETCGERNELFEAALTYLPTKITHTYKSLKVGRRQNQKHLELAVDGGDDVVDEFEGVKYTWKLNEGSREESMNRKNNFVLTFNEKQRQRVLDQYIPHVVKSYEAMKNERRILKLYSWLDDFWNESDLSHPATFDSLALSPELKKDIVDDLDRFLRRKELYKKVGKAWKRGYLLYGPPGTGKSSLIAAMANHLKFDVYDLELSSIISNSDLMRCMKEASNRCIIVIEDIDCNKEVHARSKPNGSSDDRDSESDSEGSKMKSKRFTLSGLLNYMDGLSTSGGEERIIIFTTNHKEKIDPALLRPGRMDMHIHMSFLKGKAFRMLASNYLGIEGDHPLFQQIDDLLEKVEITPAVVGEQLLRYEDPHRCLEELVQFLQQKVKDSNCDGVGRVVFSRSFDTDSLI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01920 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 437 IPR027417 -
Viun2g01920 478 SMART AAA_5 244 392 IPR003593 GO:0016887
Viun2g01920 478 Pfam Domain associated at C-terminal with AAA 44 140 IPR025753 -
Viun2g01920 478 PANTHER BCS1 AAA-TYPE ATPASE 28 455 - -
Viun2g01920 478 Pfam ATPase family associated with various cellular activities (AAA) 249 388 IPR003959 GO:0005524|GO:0016887
Viun2g01920 478 MobiDBLite consensus disorder prediction 312 336 - -
Viun2g01920 478 Gene3D - 387 459 - -
Viun2g01920 478 CDD RecA-like_BCS1 223 388 - -
Viun2g01920 478 ProSitePatterns AAA-protein family signature. 360 378 IPR003960 GO:0005524|GO:0016887
Viun2g01920 478 Gene3D - 200 386 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01920 Viun-Chr2 27943176 27944908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01920 240 388 Calmodulin-binding Proteins AT3G56690 31.210 2.44e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01920 - K08900 gmx:100789094 682.174