Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01902 ATGGGTCGCGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGTCTTACCACAAAAAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAGAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCACAGGATTGGTGAGGGTTTGGATTTGGACGAGCTGAGCTTCCAGCAACTGCGAACTCTTGAAGAGGATATGGTCGCTTCCATAGGGAAAATACGCGAGCGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTAAGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCACCCTCTATGCATTCTGTCAGCACCATACTCATCTGAACATTCCCTCACATCATCAACATCAACACCATGGAGAAGAACCCTTTAAAAATGACGATCTGCGCCTTGCTTAA 711 0.4374 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELKEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNIPSHHQHQHHGEEPFKNDDLRLA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01902 236 Coils Coil 85 105 - -
Viun2g01902 236 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Viun2g01902 236 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g01902 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Viun2g01902 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Viun2g01902 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun2g01902 236 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g01902 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun2g01902 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun2g01902 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun2g01902 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun2g01902 236 MobiDBLite consensus disorder prediction 218 236 - -
Viun2g01902 236 MobiDBLite consensus disorder prediction 215 236 - -
Viun2g01902 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun2g01902 236 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Viun2g01902 236 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01902 Viun-Chr2 27782844 27785702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01902 1 224 MADS-box Gene Family AT3G54340 50.000 3.26e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun2g01902 K-box 8.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01902 K09264 - gmx:100791963 420.239