Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01901 ATGGGTCGCGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGTCTTACCACAAAAAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAGAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCACAGGATTGGTGAGGGTTTGGATTTGGACGAGCTGAGCTTCCAGCAACTGCGAACTCTTGAAGAGGATATGGTCGCTTCCATAGGGAAAATACGCGAGCGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCACCCTCTATGCATTCTGTCAGCACCATACTCATCTGA 591 0.4433 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELETRNQQLHWPMVPPPSMHSVSTILI 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01901 196 Coils Coil 85 105 - -
Viun2g01901 196 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Viun2g01901 196 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Viun2g01901 196 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g01901 196 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Viun2g01901 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Viun2g01901 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun2g01901 196 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Viun2g01901 196 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Viun2g01901 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Viun2g01901 196 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Viun2g01901 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun2g01901 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun2g01901 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01901 Viun-Chr2 27782844 27785709 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01901 1 183 MADS-box Gene Family AT3G54340 56.284 3.64e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Viun2g01901 K-box 5.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01901 K09264 - gmx:100784496 325.479