Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01898 ATGGAGTGCATGGAGGCAGCTTTGAAAAGCAATTTGAGGAAAGAAATGATGGTACAGCTCAGTCCAGAAACCTTCATGGAGGAGTTAAGTGTGCAGAACGGAACCACTTGCGACGACTTTTTCGTCGACGACCTCCTTGACTTCTCGCACGTGGAGGAAGAACCAGAACAGCAGCAGGAACAAGACTTGGTTTGTGTATCCCTTCAGAAAGAAAACCCATGCCAAGAGCCCTATGCTTTCAAACCCGATTATTCCTCTCTGCCCACCACCGAGCTTAGCGTTCTGGCGGATGACGTGGCGGACTTCGAGTGGTTGTCTCATTTCGTCGAGGATTCCTTCTCGGAATTCTCTGCGGCGCTCCCCACCGTAACGGAGGGCAACCCGACCGCGACGGGCCATGCTGCGAAAGAGCCGAAGCCAGAACCGGAAAACCCGGTTTTCACCTTCAAAACCCCGGTTCAGACCAAGGCGAGAAGCAAGCGAAGCAGGAACGGTGTTCGTGTCTGGCCACTGGGTTCCCCTTCCTTCACCGAATCCTCCTCGAGCTCCACCACCACCACTTCATCATCTTCCTCCTCCTCCCCCTCCAGCCCCTTGCTAATTTACACCAACTTCTCTCGTAGCCTCGACCACGTTTGCTCCGAGCCCAAACCCAATAAACCGAAGAAAAAACACTCTTCCGACAGTGCGGGCACCCTGGCGCCGCGACGGTGTAGCCACTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCGCTCGGCCCAAAAACACTCTGTAACGCATGCGGGGTGCGGTTCAAGTCGGGAAGGCTCTTACCCGAATATAGGCCCGCTTGCAGCCCAACATTCTCCAGCGAATTGCATTCAAACCACCATCGTAAAGTGCTCGAGATGCGGCAGAAGAAGGAGATGACGACTGGGATTGAAAATGGTTTTACCCCCGCTCCTGTTCCCAAATTTTGA 966 0.5455 MECMEAALKSNLRKEMMVQLSPETFMEELSVQNGTTCDDFFVDDLLDFSHVEEEPEQQQEQDLVCVSLQKENPCQEPYAFKPDYSSLPTTELSVLADDVADFEWLSHFVEDSFSEFSAALPTVTEGNPTATGHAAKEPKPEPENPVFTFKTPVQTKARSKRSRNGVRVWPLGSPSFTESSSSSTTTTSSSSSSSPSSPLLIYTNFSRSLDHVCSEPKPNKPKKKHSSDSAGTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEMTTGIENGFTPAPVPKF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01898 321 Gene3D - 231 307 IPR013088 GO:0006355|GO:0008270
Viun2g01898 321 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 294 - -
Viun2g01898 321 CDD ZnF_GATA 237 285 IPR000679 GO:0006355|GO:0043565
Viun2g01898 321 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Viun2g01898 321 PANTHER GATA TRANSCRIPTION FACTOR 27 305 - -
Viun2g01898 321 MobiDBLite consensus disorder prediction 211 236 - -
Viun2g01898 321 MobiDBLite consensus disorder prediction 124 197 - -
Viun2g01898 321 Pfam GATA zinc finger 238 272 IPR000679 GO:0006355|GO:0043565
Viun2g01898 321 MobiDBLite consensus disorder prediction 173 197 - -
Viun2g01898 321 MobiDBLite consensus disorder prediction 213 230 - -
Viun2g01898 321 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Viun2g01898 321 PIRSF Txn_fac_GATA_plant 1 316 IPR016679 GO:0003677|GO:0005634|GO:0045893
Viun2g01898 321 SMART GATA_3 232 286 IPR000679 GO:0006355|GO:0043565
Viun2g01898 321 FunFam GATA transcription factor 227 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01898 Viun-Chr2 27767811 27769226 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01898 5 321 C2C2-Gata Transcription Factor Family AT5G66320 49.425 7.62e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun2g01898 GATA 1.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01898 - - var:108335072 547.74