Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01897 ATGCGTATACAAAATACAAACGTATTTAAAACGTATAAATACTTTAAAGAAGGAAAAAGTAAATATGAGAGGCTGTGGAGAGTGAGAAAGAAACGGGCGCTTTTAGTAATAATCCAGGGACGCTTTTATCCCTCATTCAATGCTTTACCAAACTCCCTATCCTCAACCTTTTCAATTTCATCCTTTGCCTTCTTCTTCCACCTCTCTTCTCCTCCCAACCTCATTTTACATCTCTCCTATCTCTCTTCTTCCTCAGACATGGAGTGCATGGAGGCAGCTTTGAAAAGCAATTTGAGGAAAGAAATGATGGTACAGCTCAGTCCAGAAACCTTCATGGAGGAGTTAAGTGTGCAGAACGGAACCACTTGCGACGACTTTTTCGTCGACGACCTCCTTGACTTCTCGCACGTGGAGGAAGAACCAGAACAGCAGCAGGAACAAGACTTGGTTTGTGTATCCCTTCAGAAAGAAAACCCATGCCAAGAGCCCTATGCTTTCAAACCCGATTATTCCTCTCTGCCCACCACCGAGCTTAGCGTTCTGGCGGATGACGTGGCGGACTTCGAGTGGTTGTCTCATTTCGTCGAGGATTCCTTCTCGGAATTCTCTGCGGCGCTCCCCACCGTAACGGAGGGCAACCCGACCGCGACGGGCCATGCTGCGAAAGAGCCGAAGCCAGAACCGGAAAACCCGGTTTTCACCTTCAAAACCCCGGTTCAGACCAAGGCGAGAAGCAAGCGAAGCAGGAACGGTGTTCGTGTCTGGCCACTGGGTTCCCCTTCCTTCACCGAATCCTCCTCGAGCTCCACCACCACCACTTCATCATCTTCCTCCTCCTCCCCCTCCAGCCCCTTGCTAATTTACACCAACTTCTCTCGTAGCCTCGACCACGTTTGCTCCGAGCCCAAACCCAATAAACCGAAGAAAAAACACTCTTCCGACAGTGCGGGCACCCTGGCGCCGCGACGGTGTAGCCACTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCGCTCGGCCCAAAAACACTCTGTAACGCATGCGGGGTGCGGTTCAAGTCGGGAAGGCTCTTACCCGAATATAGGCCCGCTTGCAGCCCAACATTCTCCAGCGAATTGCATTCAAACCACCATCGTAAAGTGCTCGAGATGCGGCAGAAGAAGGAGATGACGACTGGGATTGAAAATGGTTTTACCCCCGCTCCTGTTCCCAAATTTTGA 1224 0.5114 MRIQNTNVFKTYKYFKEGKSKYERLWRVRKKRALLVIIQGRFYPSFNALPNSLSSTFSISSFAFFFHLSSPPNLILHLSYLSSSSDMECMEAALKSNLRKEMMVQLSPETFMEELSVQNGTTCDDFFVDDLLDFSHVEEEPEQQQEQDLVCVSLQKENPCQEPYAFKPDYSSLPTTELSVLADDVADFEWLSHFVEDSFSEFSAALPTVTEGNPTATGHAAKEPKPEPENPVFTFKTPVQTKARSKRSRNGVRVWPLGSPSFTESSSSSTTTTSSSSSSSPSSPLLIYTNFSRSLDHVCSEPKPNKPKKKHSSDSAGTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEMTTGIENGFTPAPVPKF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01897 407 PANTHER GATA TRANSCRIPTION FACTOR 113 391 - -
Viun2g01897 407 MobiDBLite consensus disorder prediction 259 283 - -
Viun2g01897 407 ProSitePatterns GATA-type zinc finger domain. 324 349 IPR000679 GO:0006355|GO:0043565
Viun2g01897 407 MobiDBLite consensus disorder prediction 297 322 - -
Viun2g01897 407 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 320 380 - -
Viun2g01897 407 Gene3D - 317 393 IPR013088 GO:0006355|GO:0008270
Viun2g01897 407 MobiDBLite consensus disorder prediction 210 283 - -
Viun2g01897 407 FunFam GATA transcription factor 313 398 - -
Viun2g01897 407 Pfam GATA zinc finger 324 358 IPR000679 GO:0006355|GO:0043565
Viun2g01897 407 ProSiteProfiles GATA-type zinc finger domain profile. 318 354 IPR000679 GO:0006355|GO:0043565
Viun2g01897 407 CDD ZnF_GATA 323 371 IPR000679 GO:0006355|GO:0043565
Viun2g01897 407 SMART GATA_3 318 372 IPR000679 GO:0006355|GO:0043565
Viun2g01897 407 MobiDBLite consensus disorder prediction 299 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01897 Viun-Chr2 27767811 27769489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01897 91 407 C2C2-Gata Transcription Factor Family AT5G66320 49.425 7.06e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun2g01897 GATA 2.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01897 - - var:108335072 550.821