Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01888 ATGGACCAGCCGCTTCAACCGCAGCCGGAGGCTGCGGCTGCGGCTGCGGCAAACACCGCTCGGGGTTTGGAGGACTCCCGGCCGGTGGGAGCCACTGTCGCGCCTGCTGCAGGCTGTGCTGATGTGGCCGAAAAAGATGTTAGTAGTAGCGTGCCGAATTCGGAGGTTACGGTCGTCGAAGGCGCCGTTTTGAAACGGAAGCGTGGTCGTCCGGCCAAGGGAGCTCCGAAAGTGGTGCCTGTCGTGAGACAAAAGAAGGACGAGGAGGATGTTTGCTTCATTTGCTTCGACGGTGGGAGCCTTGTTCTCTGTGATCGGAGGGGTTGTCCTAAAGCTTATCATCCGACGTGTATTAAGCGAGACGAAGCGTTTTTTCGATCAAAGGCCAAGTGGAACTGCGGTTGGCATATATGTAGCGCCTGTCAAAAGGCTTCGCATTATATGTGCTATACTTGCACGTACTCTTTGTGCAAGGGGTGCACAAAAGACGCAGATTTTGTTTGTATCAGAGAGAATAAAGGTTTGTGCGGGATATGCATGAGGACTATAATGCTGATTGAGAACAGTGTCCAAGGAAATAAGGAAATGTGTGAAGTGGATTTCGATGACAAAAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGATGTATTTGAAAGGGAAGCTATCTTTAACATTTGATGAGCTCCTACGGGCTAAAAACCCCTGGAAAGCTGTTGCTCCTATGAGTTATAAGGTTCAAAGTCCCCATGAACTTTATCATCTTAGAGATGACAAAGGCTCTGGTTCCGAGAACTCCTGTATAGACATAGAATCAAATAATTTGAAGAACAAAAGGCCCAAGAGACAGCCAAAACTTCTTGGCAAGGGTGATTGCCTGGACAGGATGGGTTCAGGTGGCGACAGAGTTATGCCTTTGCCTGAATGCACAAAATGGGCATCGAACGAGCTACTAGAGTTTGTTTCACATATGAAAAATGGTGATACATCTCTCCTGTCTCAATTTGATGTCCAGACTCTCTTGCTGGAGTATGTGAAGAAAAATAACCTTCGTGATCCTCAACAGATATCTGAAATTGTTTGTGATTCTAGACTACTAAATTTGTTTGGAAAATCACGAGTCAGCCAAATTGAAATGCTAAAGCTCCTTGAATCCCATTTTCTTTTAAAACACAATGGACCAGCAGAAAATACTTTTGGAGCAGGAATTATTAATACTGTTGCTGGTGAAGGGGAGGCCATTGACCCTCATAATAAACAGTTGATGTTAGTTAATGACAAGAGATCTAAAACACATAAAAATGCAGATGTTCTAGTTCCGCAAAATAACCCAAATGCATATGCTGCAATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATTTAACTGAAGATATTGAAAAGATTCACGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCGAGCAATGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGTAGGTACAAGCAAGGTTGCTGAACCATACAAAATTGGGACAAGAACAACTGATATTAAGCTTGAAATTTTAAACTTAAACAGGAAGGAGGTCATATCCATTGCTGAAATTTCTAATCAGGAGTTCTCCGAGGATGAATGCAAGCGGTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGACTGTGGGAGAGATTCTAAACAAAGCATTAACACTTCAAGCAATTAGAGTTAATGATTTGCTGGAAGCTGAGATTTTGCGGCTTAATCATCTTCGTGATAGAGCAAGTGAAAAGGGGCATAGAAAAGAGCTTAAAGAATATGAGGAGAAGTTGCAGCTACTGAACTCCCCAGAGGAGCAGCAACGCAGGCTGCAAGAAATTCCAGATATACACTCTGACCCCAATTTAGATTCAATGTTTGAGTCTGATGAAGATGATGGAGAGTCGGATGAAAGGAAGCAAGATAGCAATATATTTTCAAAATATCTTGGGTTTGATAGAAGAGAGAGGGGCTCTTTTTTTCCAAGAATTTCGAACAATGTCTTCAATGATGCGGGAGGCAAAACACAAGACTTGCCTGTTACCCGAGAACATGTTGGGAATACATGCACAGTAAAGAACTGTGACACAGCTATCGAGGATAGCACTACTACAGTTGTGAAATCAGAAGTGTCTAGTGTTGCAGTGGACATTTCACCATCACTTATTCCAGTGGAGATACAGCAGCCACTTAATGAATTTTTGAATGATAGATCGTGGAATTATCAAGATCCAACTGGGAAGATTCAAGGGCCTTTTTCTATGTTGCAGCTGTACAAATGGAATGTAAGTGGAGGTTTCCCTCCAGATCTCAAAATATGGAGGATAGGTGAGAAACAGGATAACTCTATACTGTTAACGGATGCACTAAGTGGGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAACCCATTGCTCTCTCTAGGGGTCAGTGTTACATTGGATAATAAAGATAATAGTCAGGATGCTGGGAAGAATGTAGTGAAGAATGGAATTTCTGCAGATGGGCAAATTATTGAACAGAGCAAGGAACAAAAAGTGTATGATACCTCTACCCAGTCTGATGGTAAAGCTGAGCCTGTTAGGAGCAATGGATGGCTTGGGCCGCTGCATTTATACCCTTCACCATTGACAACTGCCATTACTGAAAAAATGAATGAAGCTTCTTCTGATAAATTAAGGAAAGGTTATGGGATTGTGCGAAACTCCCAAGATAATGGAAATAATGGCTCAAACAGGACAGTGGATGGACAGAGTAATAGTGGGCAAAGTTATCAGAAGCCATCAGATAGTGAAGAGAATTCAGGGCAATCTTCTGCACAGACCTGGAGACACCCTAATGTTAATAGCTCTTCGGATTGCCTGGTTACCACGTCAGCTCATGTTTCGGGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCACAATTCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGACCCCCTCATGTTAATAGCCCTTCAGATTGCATGGTTACCACGTCAGCTCATGCCTCTGGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCCTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGTCACCCTAATGTAAATAGTTCTTCTGATTGCTTGGTTAACACACCAGCTCATGTTTCTGGTACAAAAACATCACCACATAAGCTGGGCTTTGATTTGCATAATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACTTGGAGACACTTTGATATAAATATTTCTTCCAATTGCTTAGTTACCTCATCAAATCATGTTTCTGGTGTAAAAACATCACCACCGCATAAGCTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAACGTGTAATACATCTACATGGCAGGCAATCATTGGCGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGATGATTTGACTGAAGGTTCTAAAAATGACTGTCTCAGCTTTGTTGCAGACCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCGACAGCCGCAGAGGAACCATTACGGCAAGCAGATGTACATCACCATCATCAAAGAATTTCTGCTGAGCATTCTTCTAGAAGTTCTAAAGTTGAGGTGGGTACAAAAACCGCAAGTGTCTCGGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCCGTTGTTCCATCTCCTGCAACCTTGGGCCTGGGTATAGACACCACTTGGAGACTTGGGCTAGATAGTACACCCTTGGGGTGGAGTGGAATAGATCAAGGAAATACAAATGTGGGTTGGGGAGTGGGACAAACAGCAGTGCAGGAAACCAGGAGCTCAAATTCATACACTTCTGTAACTCCAGGTTTTGGGGATAACCAAACAAGATATGGCAGTGATCGTTTTTCTGTGCCCAGAGATCGGGGTTCTCAAGGTCATGCTAGGGAATCAGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCGTCGTATGGTGTTGGGAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGTGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAGGGAGCATCCTGTGATTACTGGCACCCATGA 4308 0.4336 MDQPLQPQPEAAAAAAANTARGLEDSRPVGATVAPAAGCADVAEKDVSSSVPNSEVTVVEGAVLKRKRGRPAKGAPKVVPVVRQKKDEEDVCFICFDGGSLVLCDRRGCPKAYHPTCIKRDEAFFRSKAKWNCGWHICSACQKASHYMCYTCTYSLCKGCTKDADFVCIRENKGLCGICMRTIMLIENSVQGNKEMCEVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLRAKNPWKAVAPMSYKVQSPHELYHLRDDKGSGSENSCIDIESNNLKNKRPKRQPKLLGKGDCLDRMGSGGDRVMPLPECTKWASNELLEFVSHMKNGDTSLLSQFDVQTLLLEYVKKNNLRDPQQISEIVCDSRLLNLFGKSRVSQIEMLKLLESHFLLKHNGPAENTFGAGIINTVAGEGEAIDPHNKQLMLVNDKRSKTHKNADVLVPQNNPNAYAAIDVHNLNLIYLRRCLMENLTEDIEKIHEKVVGSFVRIRISSNDQKQDMYRLVQVVGTSKVAEPYKIGTRTTDIKLEILNLNRKEVISIAEISNQEFSEDECKRLRQSIKYGLSKRLTVGEILNKALTLQAIRVNDLLEAEILRLNHLRDRASEKGHRKELKEYEEKLQLLNSPEEQQRRLQEIPDIHSDPNLDSMFESDEDDGESDERKQDSNIFSKYLGFDRRERGSFFPRISNNVFNDAGGKTQDLPVTREHVGNTCTVKNCDTAIEDSTTTVVKSEVSSVAVDISPSLIPVEIQQPLNEFLNDRSWNYQDPTGKIQGPFSMLQLYKWNVSGGFPPDLKIWRIGEKQDNSILLTDALSGKCSKNVSLPFNNPLLSLGVSVTLDNKDNSQDAGKNVVKNGISADGQIIEQSKEQKVYDTSTQSDGKAEPVRSNGWLGPLHLYPSPLTTAITEKMNEASSDKLRKGYGIVRNSQDNGNNGSNRTVDGQSNSGQSYQKPSDSEENSGQSSAQTWRHPNVNSSSDCLVTTSAHVSGTKTSPHKLGFDLHNSPSPPACNTSSGQTWRPPHVNSPSDCMVTTSAHASGTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPNVNSSSDCLVNTPAHVSGTKTSPHKLGFDLHNPPSPPACNTSSGQTWRHFDINISSNCLVTSSNHVSGVKTSPPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHQRISAEHSSRSSKVEVGTKTASVSGNQWDSGSENSPVVPSPATLGLGIDTTWRLGLDSTPLGWSGIDQGNTNVGWGVGQTAVQETRSSNSYTSVTPGFGDNQTRYGSDRFSVPRDRGSQGHARESGFGRSRIAFNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 1435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01888 1435 Pfam SWIB/MDM2 domain 314 387 IPR003121 -
Viun2g01888 1435 SMART PHD_3 91 137 IPR001965 -
Viun2g01888 1435 CDD PHD5_NSD 91 136 - -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 1249 1298 - -
Viun2g01888 1435 ProSiteProfiles Plus3 domain profile. 449 582 IPR004343 GO:0003677
Viun2g01888 1435 MobiDBLite consensus disorder prediction 862 888 - -
Viun2g01888 1435 FunFam Zinc finger CCCH domain-containing protein 19 450 579 - -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 862 878 - -
Viun2g01888 1435 Gene3D - 450 579 IPR036128 GO:0003677
Viun2g01888 1435 Pfam GYF domain 758 799 IPR003169 GO:0005515
Viun2g01888 1435 MobiDBLite consensus disorder prediction 918 1012 - -
Viun2g01888 1435 ProSiteProfiles Zinc finger C3H1-type profile. 1410 1435 IPR000571 GO:0046872
Viun2g01888 1435 Pfam Plus-3 domain 454 557 IPR004343 GO:0003677
Viun2g01888 1435 ProSitePatterns Zinc finger PHD-type signature. 92 152 IPR019786 -
Viun2g01888 1435 SMART swib_2 309 392 IPR019835 -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 1249 1271 - -
Viun2g01888 1435 SMART gyf_5 756 811 IPR003169 GO:0005515
Viun2g01888 1435 SUPERFAMILY CCCH zinc finger 1410 1434 IPR036855 GO:0046872
Viun2g01888 1435 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 22 1435 - -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 1 27 - -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 1368 1387 - -
Viun2g01888 1435 SUPERFAMILY FYVE/PHD zinc finger 87 142 IPR011011 -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 920 985 - -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 620 659 - -
Viun2g01888 1435 FunFam Zinc finger CCCH domain-containing protein 19 81 181 - -
Viun2g01888 1435 Gene3D - 757 813 IPR035445 -
Viun2g01888 1435 SMART rtf1 449 559 IPR004343 GO:0003677
Viun2g01888 1435 MobiDBLite consensus disorder prediction 1272 1297 - -
Viun2g01888 1435 ProSiteProfiles Zinc finger PHD-type profile. 89 155 IPR019787 -
Viun2g01888 1435 CDD SWIB-MDM2_like 312 387 - -
Viun2g01888 1435 MobiDBLite consensus disorder prediction 620 635 - -
Viun2g01888 1435 CDD GYF 755 810 IPR003169 GO:0005515
Viun2g01888 1435 SUPERFAMILY GYF domain 748 808 IPR035445 -
Viun2g01888 1435 Gene3D SWIB/MDM2 domain 306 394 IPR036885 -
Viun2g01888 1435 ProSiteProfiles GYF domain profile. 755 809 IPR003169 GO:0005515
Viun2g01888 1435 ProSiteProfiles SWIB/MDM2 domain profile. 306 389 IPR003121 -
Viun2g01888 1435 SUPERFAMILY Plus3-like 450 578 IPR036128 GO:0003677
Viun2g01888 1435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 180 IPR013083 -
Viun2g01888 1435 SUPERFAMILY SWIB/MDM2 domain 311 388 IPR036885 -
Viun2g01888 1435 Coils Coil 583 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01888 Viun-Chr2 27692616 27699440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01888 89 172 PHD Transcription Factor Family AT5G36670 33.721 1.52e-06 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Viun2g01888 Plus-3 2.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01888 - - vun:114173625 2875.12