LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g01883	ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGACGAGGCTGCACTTTGTCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCGAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAGAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCCAGGTTCACAGGCATTAGAACCTGGTGAGAGTAAAAGAGGACAAAATCCACTTCCCAAGCTAAGAATGGGAGAGAAGCAGCAGAATCATGTGATGCCTCTGCTTCCAACACCAGGATCTGATGCTGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAATAGATTACATGAACAAGCATCAAATAATCAGGTATTCGATAAACTGTCACAAGACTTATACCAAGTGTGGTTGAAGAGTTGA	582	0.4399	MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPGSQALEPGESKRGQNPLPKLRMGEKQQNHVMPLLPTPGSDADGHTKMETKMIDLNMKPNNRLHEQASNNQVFDKLSQDLYQVWLKS	193

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g01883	193	ProSiteProfiles	Zinc finger B-box type profile.	1	47	IPR000315	GO:0008270
	Viun2g01883	193	Pfam	B-box zinc finger	3	42	IPR000315	GO:0008270
	Viun2g01883	193	CDD	Bbox1_BBX-like	4	47	-	-
	Viun2g01883	193	SMART	bboxneu5	51	89	IPR000315	GO:0008270
	Viun2g01883	193	SMART	bboxneu5	1	47	IPR000315	GO:0008270
	Viun2g01883	193	MobiDBLite	consensus disorder prediction	98	126	-	-
	Viun2g01883	193	PANTHER	B-BOX ZINC FINGER PROTEIN 22	1	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g01883	Viun-Chr2	27672470	27675367	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun2g01883	1	188	C2C2-CO-like Transcription Factor Family	AT4G38960	54.872	1.22e-64	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Viun2g01883		zf-B_box	1.2e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g01883	-		-	gmx:100795117	343.584