Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01882 ATGCGAACGCTTTGTGATGCTTGTGAGAGTGCGGCGGCTATAGTTTTCTGCGCCGCTGACGAGGCTGCACTTTGTCGTGCCTGCGATGAGAAGGTTCACATGTGCAATAAGCTAGCGAGTAGACATGTGAGAGTTGGTCTTGCAAGTCCAAGTGATGTGCCACGGTGTGACATATGTGAGAATGCACCTGCTTTCTTCTATTGTGAGACAGATGGAAGTTCCCTTTGTTTGCAGTGTGATATGATAGTTCATGTTGGAGGTAAAAGAACGCATGGAAGATATCTTCTGTTCAGGCAGAGAGTTGAGTTTCCAGGAGACAAATCTAGTCATGCTGAAAATCCAGGTTCACAGGCATTAGAACCTGGTGAGAGTAAAAGAGGACAAAATCCACTTCCCAAGCTAAGAATGGGAGAGAAGCAGCAGAATCATGTGATGCCTCTGCTTCCAACACCAGGATCTGATGCTGATGGGCATACCAAGATGGAAACTAAAATGATTGATTTGAACATGAAGCCTAATAATAGATTACATGAACAAGCATCAAATAATCAGGTATTCGATAAACTGTCACAAGACTTATACCAAGTGTGGTTGAAGAGTTGA 603 0.4378 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGGKRTHGRYLLFRQRVEFPGDKSSHAENPGSQALEPGESKRGQNPLPKLRMGEKQQNHVMPLLPTPGSDADGHTKMETKMIDLNMKPNNRLHEQASNNQVFDKLSQDLYQVWLKS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01882 200 FunFam B-box zinc finger protein 19 2 92 - -
Viun2g01882 200 SMART bboxneu5 51 96 IPR000315 GO:0008270
Viun2g01882 200 SMART bboxneu5 1 47 IPR000315 GO:0008270
Viun2g01882 200 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Viun2g01882 200 Gene3D Classic Zinc Finger 2 91 - -
Viun2g01882 200 CDD Bbox1_BBX-like 56 96 - -
Viun2g01882 200 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Viun2g01882 200 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Viun2g01882 200 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
Viun2g01882 200 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Viun2g01882 200 CDD Bbox1_BBX-like 4 47 - -
Viun2g01882 200 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Viun2g01882 200 MobiDBLite consensus disorder prediction 105 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01882 Viun-Chr2 27672470 27675367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01882 1 195 C2C2-CO-like Transcription Factor Family AT4G38960 57.949 2.57e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Viun2g01882 zf-B_box 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01882 - - gmx:100795117 366.696