Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01874 ATGTTTTTTCTTCAAACCTTTTCCATACATTTTTTCTTTTTATTCAGCCAAGTTTCGCAAACAACCACACCAGTCTTAAACAGCAACCATGTACCAGTATTTGCTATGATGGAGTCGATGGAGTCATGTGTCCCACCCGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTCAGGAAGAAGGTGGCTTCTCAAAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCGTGGGATCTCCAAGATAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAGAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCGGGGTTTTGGAAGGCTACAGGAAGAGACAAAGCAGTGTATGACAAGACAAAACTAATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAATCTGATTGGATCATGCACGAGTATAGACTTGAATCGGACGAGAATGGACCTCCACAAGAGGAAGGATGGGTGGTTTGCAGAGCCTTCAAGAAAAAAACCACTGCACAGACAAAGAGCATTGAAGGATGGGACTCAAGCTACTTCTTTGAGGAGGGAAGTGGTGTGAGCACTGTGGTTGATCCAATCGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTATCTCAAAATTTCTTGTGTAAGCAAGAGATAGAAGCCGATAACTTGAGTTGCATGCTCCAAGATCCATTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCATTAGTGAAGAGGCCAAGCACAGTGTCATTGGTATCAGACAACAACGAAGACGAGGACATTATTCAAAACAGGTTATCCAACAACAACAACAACAACAACACAAAGAAAGTGACTGATTGGAGGGCTCTTGACAAGTTTGTAGCGTCTCAACTGAGTCAAGAAGACACGCTTGAAACCAATGGTCTCTCAGGCTTTGAAGGCCATGATAGCCACGACATGGCACTGCTGTTACTGCAGAGCAGTAGGGATGAAGGGAACAGGCTAAGCCCTTTTCTAAACACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1134 0.433 MFFLQTFSIHFFFLFSQVSQTTTPVLNSNHVPVFAMMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTAQTKSIEGWDSSYFFEEGSGVSTVVDPIDLISRQSQSFLSQNFLCKQEIEADNLSCMLQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDIIQNRLSNNNNNNNTKKVTDWRALDKFVASQLSQEDTLETNGLSGFEGHDSHDMALLLLQSSRDEGNRLSPFLNTSSDCDIGICVFEK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01874 377 SUPERFAMILY NAC domain 36 193 IPR036093 GO:0003677|GO:0006355
Viun2g01874 377 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 41 296 - -
Viun2g01874 377 ProSiteProfiles NAC domain profile. 44 193 IPR003441 GO:0003677|GO:0006355
Viun2g01874 377 FunFam NAC domain-containing protein 53 197 - -
Viun2g01874 377 Pfam No apical meristem (NAM) protein 45 172 IPR003441 GO:0003677|GO:0006355
Viun2g01874 377 Gene3D NAC domain 53 198 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01874 Viun-Chr2 27622897 27627026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01874 37 376 NAC Transcription Factor Family AT2G18060 65.489 2.36e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun2g01874 NAM 6.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01874 - - vun:114173187 761.911