Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01873 ATGATGGAGTCGATGGAGTCATGTGTCCCACCCGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTCAGGAAGAAGGTGGCTTCTCAAAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCGTGGGATCTCCAAGATAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTCTTCAGCCACAAAGATAAGAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCGGGGTTTTGGAAGGCTACAGGAAGAGACAAAGCAGTGTATGACAAGACAAAACTAATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAATCTGATTGGATCATGCACGAGTATAGACTTGAATCGGACGAGAATGGACCTCCACAAGAGGAAGGATGGGTGGTTTGCAGAGCCTTCAAGAAAAAAACCACTGCACAGACAAAGAGCATTGAAGGATGGGACTCAAGCTACTTCTTTGAGGAGGGAAGTGGTGTGAGCACTGTGGTTGATCCAATCGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTATCTCAAAATTTCTTGTGTAAGCAAGAGATAGAAGCCGATAACTTGAGTTGCATGCTCCAAGATCCATTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCATTAGTGAAGAGGCCAAGCACAGTGTCATTGGTATCAGACAACAACGAAGACGAGGACATTATTCAAAACAGGTTATCCAACAACAACAACAACAACAACACAAAGAAAGTGACTGATTGGAGGGCTCTTGACAAGTTTGTAGCGTCTCAACTGAGTCAAGAAGACACGCTTGAAACCAATGGTCTCTCAGGCTTTGAAGGCCATGATAGCCACGACATGGCACTGCTGTTACTGCAGAGCAGTAGGGATGAAGGGAACAGGCTAAGCCCTTTTCTAAACACAAGCTCAGACTGTGATATTGGGATATGCGTATTTGAAAAATGA 1029 0.4422 MMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKTKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTAQTKSIEGWDSSYFFEEGSGVSTVVDPIDLISRQSQSFLSQNFLCKQEIEADNLSCMLQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDIIQNRLSNNNNNNNTKKVTDWRALDKFVASQLSQEDTLETNGLSGFEGHDSHDMALLLLQSSRDEGNRLSPFLNTSSDCDIGICVFEK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01873 342 Gene3D NAC domain 18 163 IPR036093 GO:0003677|GO:0006355
Viun2g01873 342 SUPERFAMILY NAC domain 5 158 IPR036093 GO:0003677|GO:0006355
Viun2g01873 342 FunFam NAC domain-containing protein 18 162 - -
Viun2g01873 342 ProSiteProfiles NAC domain profile. 9 158 IPR003441 GO:0003677|GO:0006355
Viun2g01873 342 Pfam No apical meristem (NAM) protein 10 137 IPR003441 GO:0003677|GO:0006355
Viun2g01873 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01873 Viun-Chr2 27622897 27627169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01873 2 341 NAC Transcription Factor Family AT2G18060 65.489 1.47e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun2g01873 NAM 5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01873 - - vun:114173187 691.804