Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01872 ATGTCTGACGTTGCCGGAGAAGCTCCCGTACCCGCTCCCGCCGTGGAAAAGCCACTGGAGGAGGTGAAGGCGGCGAAGGAGAAGAAAACTAAGGCTCCGAAAGAGAAGAAGCCGAAGCAGGCTAAAACTGCTGCGCATCCTCCTTATTTTCAGATGATTAAGGAGGCTCTGGTGGCGCTGAACGAGAAAGGAGGATCGAGCCCTTATGCTATAGCGAAGTACATGGAGGAGAAGCACAAGGCGGTGCTCCCCGCGAATTTCAAGAAGATTCTAGGTCTGCAATTGAAGAACCAAGCCGCGAGAGGAAAACTCGTGAAGATCAAGGCCTCGTACAAGCTATCCGAAACCGCAAAGAAAGAGAAGAAGGAGACTAAGGTGAACGCTGAGAAGAAAGAATCGCGTCCGAAACGTAGCAGAAGGGCAACCACCGCTGCTCCGACGAGCAAAAAAACTGAGGCGGTTAAAAAGGCCGGAAAGAAGGTTGGGCCGAAGAAGAGTAAGAAGGTGACGACTCCGGCGAAGCCCAAACAGCCCAGGTCCATTAGGTCTCCGGCCAAGAGGGCCCGGAAGGCTACCGTTACTGGCGCTTGA 591 0.5364 MSDVAGEAPVPAPAVEKPLEEVKAAKEKKTKAPKEKKPKQAKTAAHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKAVLPANFKKILGLQLKNQAARGKLVKIKASYKLSETAKKEKKETKVNAEKKESRPKRSRRATTAAPTSKKTEAVKKAGKKVGPKKSKKVTTPAKPKQPRSIRSPAKRARKATVTGA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01872 196 MobiDBLite consensus disorder prediction 115 196 - -
Viun2g01872 196 SUPERFAMILY "Winged helix" DNA-binding domain 42 123 IPR036390 -
Viun2g01872 196 MobiDBLite consensus disorder prediction 115 139 - -
Viun2g01872 196 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun2g01872 196 FunFam Histone H1 41 133 - -
Viun2g01872 196 Pfam linker histone H1 and H5 family 46 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun2g01872 196 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun2g01872 196 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun2g01872 196 PRINTS Histone H5 signature 130 144 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun2g01872 196 PRINTS Histone H5 signature 167 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Viun2g01872 196 MobiDBLite consensus disorder prediction 1 48 - -
Viun2g01872 196 Coils Coil 114 134 - -
Viun2g01872 196 PANTHER HISTONE H1 23 188 - -
Viun2g01872 196 CDD H15 43 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun2g01872 196 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Viun2g01872 196 Gene3D - 40 126 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01872 Viun-Chr2 27617205 27618143 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01872 33 113 Single Myb Histone (SMH) Gene Family AT1G72740 38.272 2.43e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01872 K11275 - gmx:100500169 225.713