Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01857 ATGGGCATCTGTTTTTCAAGCACCAAGGTCAGCGGCTCCAGCAGCAACAACGCTGGTGCTTCCAATCGTAACCGTAAATGTTCGGAGCCGATGGCGGCACAGGGGGAGCCTGTGGCAGAGCATAAGCAACAGTCGTCGCATGGTCAACGGCGGCGTGAAGAATCGCGGAAGCCCCCACGCGCCAAGGAGAAAGCGGGCGGGCGTCGCCCAGGAGGGACACTGCCATGCGGAAAGCGCACAGATTTTGGGTACGACAAAGACTTTGACAAGAGATTCTCCCTCGGGAAGTTGTTGGGACACGGCCAATTCGGTTACACTTACGTTGGGATAGACAAAGCAAATGGGGACCGTGTCGCGGTTAAGAGACTCGAGAAGAGCAAGATGGTTCTCCCTATAGCGGTTGAGGATGTTAAGCGTGAAGTCAAGATATTGAAAGAACTTACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCTTTTGAGGATGATTCATACGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACTGAAAAAGATGCAGCTGTGGTTGTAAGGCAGATGCTTAAGGTTGCGGCAGAGTGTCATTTACATGGTTTGGTTCATCGGGACATGAAACCAGAGAATTTTCTTTTCAAATCAACAAGAGAAGATTCACCTTTAAAAGCTACCGATTTTGGTTTATCTGATTTCATAAAGCCTGGTAAGAGGTTTCAAGACATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGAAAGTCAGGTCCTGAGTCAGATGTATGGAGTATTGGTGTGATTACATACATATTGCTTTGTGGGAGACGTCCATTTTGGGATAAGACTGAAGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTTCGGCGGAAACCATGGCCAACCGTAAGCAATGGTGCAAAAGATTTTGTGAAGAAATTGTTGGTAAAAGATCCCCGTGCAAGATATACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGGGGAGAGGCATTAGAGATTCCTATTGACATATCTGTCCTGAACAACATGCGACAGTTTGTGAAGTATAGTCGATTGAAACAGTTTGCACTAAGGGCATTGGCCAGCACACTCAATGAAGAAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGACGTAGACAAAAACGGTTCTATCAGTCTTGAAGAGATGAGACAGGCTCTTGCTCAAGATCTCCCTTGGAAATTGAAAGAATCACGTGTGCTAGAGATATTACAAGCGATAGACAGCAACACAGACGGGCTCGTGGATTTCTCCGAGTTTGTAGCAGCTACATTACATGTACATCAGTTGGAGGAACATGATTCGTTTAAGTGGCAGCAACGGTCACAAGCTGCTTTTGAGAAATTTGACTTGGACAAAGATGGCTACATTACTCCAGATGAACTTAGAATGCACACGGGTTTGAGAGGCTCCATTGATCCATTGCTTGAGGAAGCTGATATTGATAAAGATGGAAAGATCAGCTTACCAGAATTCCGCAGACTTTTAAGAACTGCAAGCATCGGTTCTCGAACCGTGTTGAGCCCGAATCACTTTCATCGAAAGATGTAG 1662 0.4543 MGICFSSTKVSGSSSNNAGASNRNRKCSEPMAAQGEPVAEHKQQSSHGQRRREESRKPPRAKEKAGGRRPGGTLPCGKRTDFGYDKDFDKRFSLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKSKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTREDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTVSNGAKDFVKKLLVKDPRARYTAAQALSHPWVREGGEALEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEELSDLKDQFDAIDVDKNGSISLEEMRQALAQDLPWKLKESRVLEILQAIDSNTDGLVDFSEFVAATLHVHQLEEHDSFKWQQRSQAAFEKFDLDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRTVLSPNHFHRKM 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01857 553 CDD STKc_CAMK 91 351 - -
Viun2g01857 553 ProSitePatterns EF-hand calcium-binding domain. 517 529 IPR018247 -
Viun2g01857 553 Gene3D - 373 532 - -
Viun2g01857 553 MobiDBLite consensus disorder prediction 43 67 - -
Viun2g01857 553 MobiDBLite consensus disorder prediction 1 28 - -
Viun2g01857 553 PANTHER SERINE/THREONINE-PROTEIN KINASE 76 521 - -
Viun2g01857 553 Gene3D Transferase(Phosphotransferase) domain 1 178 372 - -
Viun2g01857 553 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Viun2g01857 553 MobiDBLite consensus disorder prediction 1 76 - -
Viun2g01857 553 ProSitePatterns Protein kinases ATP-binding region signature. 98 121 IPR017441 GO:0005524
Viun2g01857 553 Gene3D Phosphorylase Kinase; domain 1 85 177 - -
Viun2g01857 553 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Viun2g01857 553 ProSiteProfiles Protein kinase domain profile. 92 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01857 553 FunFam calcium-dependent protein kinase 28-like 178 371 - -
Viun2g01857 553 SMART efh_1 436 464 IPR002048 GO:0005509
Viun2g01857 553 SMART efh_1 478 506 IPR002048 GO:0005509
Viun2g01857 553 SMART efh_1 508 536 IPR002048 GO:0005509
Viun2g01857 553 SMART efh_1 399 427 IPR002048 GO:0005509
Viun2g01857 553 SUPERFAMILY Protein kinase-like (PK-like) 89 364 IPR011009 -
Viun2g01857 553 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Viun2g01857 553 Pfam Protein kinase domain 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01857 553 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Viun2g01857 553 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
Viun2g01857 553 FunFam CDPK-related kinase 1 85 177 - -
Viun2g01857 553 Pfam EF-hand domain pair 480 533 IPR002048 GO:0005509
Viun2g01857 553 Pfam EF-hand domain pair 398 461 IPR002048 GO:0005509
Viun2g01857 553 FunFam Calcium-dependent protein kinase 28 393 462 - -
Viun2g01857 553 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Viun2g01857 553 SMART serkin_6 92 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01857 553 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Viun2g01857 553 SUPERFAMILY EF-hand 381 535 IPR011992 -
Viun2g01857 553 Gene3D - 393 462 - -
Viun2g01857 553 ProSiteProfiles EF-hand calcium-binding domain profile. 512 539 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01857 Viun-Chr2 27488645 27493643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01857 1 546 EF-hand Containing Proteins AT2G17890 76.502 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Viun2g01857 Pkinase 2.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01857 K13412 - gmx:100817249 995.342