Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01837 ATGCTCATGGCTTGTGCAGGAAGAGGGAGTTTAGTTATGGCAGAAAACAAAGACGAAGCCTATTCAGAAACTTCTGAATGTTCATCAGCTTTAACCATGCCAATGGCTAGCAGGTGCAGATACTTGTTTCATAAATTATGCGGTTCTACCGATTCATGGAACAAAAGCACCACCCCAAAAGGTCGAAGACTTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAATAGTCCCTGTCTCTCATCGTACTATAGCGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCGATCTTGATAGGGCTTCTCACTATACTGACATGGCATTTCACGAAGATTTATACAACAAAATCACTTAACAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCGGTTTTGAGGATGTGGAGAATTTTGAACGCTACTTCTGAAATTACTACAGCTCAGGTCAAACTGTCTCAGTATGTGATAAGACGTCACAGCAACCCTGCGACTCAAGCAGAACAAGTTGAGCAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCTTTATTTGCAAGTCGGAAAGCTCTAAACTCTATAACCATCAACTACAAGAATGGATTTGTGCAAGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATATATTCTGATCTTTCAAACTACTCTATGGGAGTCAGCAACTCCAAGGAGGCCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAGCCCCTCGTGGAAACTATTCTGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCTCCTGAAGACTTGATCAACATAGCAGGCCTTTCCCAGGTACCTGATGGTGTAGCTTCGTGGCATGTTGCAGTGAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATGAGACCATTATGGCTGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGAGAGCTTGTTGAGATGCATAGTGGCCATATGTACTTGACTTCACAAGAGGGTTATTTGCTTGCAACTTCCACAAATGCGCCTCTTCTGGCAAATTCAACAAAGCCTAAGCTTAAGATGGCAGTTGACTGTGAAGACGATGTCATTCGACAGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCACGAGATTCATGTAGAAAATGTCAAGCTAGGCCACCAGAGATATTATATTGACTCCTTCTTTCTAAATTTGAAGAGACTCCCTTTGGTTGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTTGATGAAAGAGCCTTCAAAACGCTGGTTATTCTAATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTCTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAATTACAAGAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATATTCAACCGTGACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTAGGAAGAGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTCTAGACTTGTCTGATGATATGCCAAAGATAGTTCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTGTTCTGCGGGGATGGAGTGAAAGCCCAAATTCTTCCGTTGGAAGTCCAAATTCTCCTCTTGACCAGAAGAAATTATGGAGTTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAAACATCTATGAAAGACAACAAAGTAATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATTGATCCAAGCAAATGGGATTCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAACAAGATGGGTGGGGACATCAAAGTAGTAAAAAAAGAGGGCGCAGGAACACTGATGCGATTATGCTTGCTTCTCAGTGCGCCCATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACACTGGCTTAGTGGTACTGCTTGGATTACATGGCAACATGGGTAGATTAATTACATCGAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATGTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGCAAGAAGTTCAGTCCATAATACTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTGAAGACTAAACTACTGAACATACGAGATATGAGGAACCCAGTTTTTGTGATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAGGTACTTTGGTAGAGCAAAGTTTCTATGGATGCTGAATCATGACACTTCCAATAACGTAAAGATGGAGCTCCGAAGGAAAGGGCATTTATTGATGGTCAATAAACCCCTTTACAAGGGAAAAATGATACATATTTTGGAATCTGTTATGAAGGAGAGAAATTTTGAGCTACAAAAGAAAAACATGATTGTACCAAGGACCACAATGAAAGAGGGAGATTTGCATGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGTTCCGATGATTCTGACATATCTGATATAGCTGGTTCTAATCCTGCTAGTGCTAATGGAGATAAACCAGTTGAGAAGGTAGAAAAATCTCATCTATCATCAGCATATCATATGAATAACTGCCTAGTTAGATTAACCAATGAAAATGACTATATGGAGGAAAATGATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCCCAAATCATGATTCTGCAGAACACCAACCTAAATCACTGTCCACCAAAGAATCACCATCCATTTCAACAGCAGATCAGGATGAAGATTCTGAATGTGGTGAAACACACAGGGTCACCAGTAAATCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTTGCAACTATAATGCTTGAGAAAATGGGAGCTGATGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAATTGCATGTTCAATGCTGAAGATTGCAGAAGGGAATCACTCCAGAAAGATAGAAACACAAGATCTCAAACAGAGATTCTGTCTAGCCGTCCCTATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGGTATGAGGCAACAAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTTCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCCTGTGATGAAGCCAAATGCTTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTCAACACTCTCATAA 3792 0.4095 MLMACAGRGSLVMAENKDEAYSETSECSSALTMPMASRCRYLFHKLCGSTDSWNKSTTPKGRRLFHRDVEKEEFQYANSPCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYGLRYELLQRPVLRMWRILNATSEITTAQVKLSQYVIRRHSNPATQAEQVEQLYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMGVSNSKEANSVSTHQAWDDKAPRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNETIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGYLLATSTNAPLLANSTKPKLKMAVDCEDDVIRQGAEWLQRTYGNNFPPSHEIHVENVKLGHQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSESPNSSVGSPNSPLDQKKLWSLQKCREKPNANHSKKTSMKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGAGTLMRLCLLLSAPMDVTEQQCAVDLTDTGLVVLLGLHGNMGRLITSKWLQKNGVCTMEACDWNGLTQILRELFHARSSVHNTDFDAHYPAKEELKTKLLNIRDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFLWMLNHDTSNNVKMELRRKGHLLMVNKPLYKGKMIHILESVMKERNFELQKKNMIVPRTTMKEGDLHEFLEIDSTHFDAASSDDSDISDIAGSNPASANGDKPVEKVEKSHLSSAYHMNNCLVRLTNENDYMEENDLRKEESSSPSPNHDSAEHQPKSLSTKESPSISTADQDEDSECGETHRVTSKSVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVEALNCMFNAEDCRRESLQKDRNTRSQTEILSSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKTTSSTLS 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01837 1263 FunFam Histidine kinase 1-like protein 505 584 - -
Viun2g01837 1263 SMART HisKA_10 517 583 IPR003661 GO:0000155|GO:0007165
Viun2g01837 1263 MobiDBLite consensus disorder prediction 1046 1101 - -
Viun2g01837 1263 CDD HisKA 518 579 IPR003661 GO:0000155|GO:0007165
Viun2g01837 1263 Pfam His Kinase A (phospho-acceptor) domain 518 583 IPR003661 GO:0000155|GO:0007165
Viun2g01837 1263 ProSiteProfiles Response regulatory domain profile. 1110 1255 IPR001789 GO:0000160
Viun2g01837 1263 CDD REC_hyHK_CKI1_RcsC-like 1111 1251 - -
Viun2g01837 1263 SMART REC_2 1109 1251 IPR001789 GO:0000160
Viun2g01837 1263 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 630 780 IPR003594 -
Viun2g01837 1263 Gene3D - 585 783 IPR036890 -
Viun2g01837 1263 SMART HKATPase_4 630 782 IPR003594 -
Viun2g01837 1263 MobiDBLite consensus disorder prediction 1086 1101 - -
Viun2g01837 1263 Pfam Response regulator receiver domain 1167 1250 IPR001789 GO:0000160
Viun2g01837 1263 SUPERFAMILY CheY-like 1107 1255 IPR011006 -
Viun2g01837 1263 Gene3D - 1088 1259 - -
Viun2g01837 1263 MobiDBLite consensus disorder prediction 1059 1078 - -
Viun2g01837 1263 PANTHER TWO-COMPONENT HISTIDINE KINASE 77 787 - -
Viun2g01837 1263 PRINTS Bacterial sensor protein C-terminal signature 707 721 IPR004358 GO:0016310|GO:0016772
Viun2g01837 1263 PRINTS Bacterial sensor protein C-terminal signature 742 760 IPR004358 GO:0016310|GO:0016772
Viun2g01837 1263 PRINTS Bacterial sensor protein C-terminal signature 725 735 IPR004358 GO:0016310|GO:0016772
Viun2g01837 1263 MobiDBLite consensus disorder prediction 991 1023 - -
Viun2g01837 1263 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 505 584 IPR036097 GO:0000155|GO:0007165
Viun2g01837 1263 Gene3D - 505 584 - -
Viun2g01837 1263 ProSiteProfiles Histidine kinase domain profile. 524 782 IPR005467 -
Viun2g01837 1263 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 572 778 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01837 Viun-Chr2 27344238 27350900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01837 34 1259 Histidine Kinase Gene Family AT2G17820 63.717 0.0 1561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun2g01837 HATPase_c 2.6e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01837 - - vra:106777758 2306.56