Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01836 ATGCTCATGGCTTGTGCAGGAAGAGGGAGTTTAGTTATGGCAGAAAACAAAGACGAAGCCTATTCAGAAACTTCTGAATGTTCATCAGCTTTAACCATGCCAATGGCTAGCAGGTGCAGATACTTGTTTCATAAATTATGCGGTTCTACCGATTCATGGAACAAAAGCACCACCCCAAAAGGTCGAAGACTTTTCCACAGAGATGTGGAAAAAGAAGAATTCCAGTATGCTAATAGTCCCTGTCTCTCATCGTACTATAGCGTCTTTGTGGTTCGACTAGCAATCATGGTCATGCTAGCGATCTTGATAGGGCTTCTCACTATACTGACATGGCATTTCACGAAGATTTATACAACAAAATCACTTAACAGTTTGGCATATGGTTTGCGTTATGAACTTCTGCAACGCCCGGTTTTGAGGATGTGGAGAATTTTGAACGCTACTTCTGAAATTACTACAGCTCAGGTCAAACTGTCTCAGTATGTGATAAGACGTCACAGCAACCCTGCGACTCAAGCAGAACAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCTTTATTTGCAAGTCGGAAAGCTCTAAACTCTATAACCATCAACTACAAGAATGGATTTGTGCAAGCATTCCACAGAGATCTGAAGGACAACAACACATTTTACATATATTCTGATCTTTCAAACTACTCTATGGGAGTCAGCAACTCCAAGGAGGCCAATTCCGTTTCAACACATCAAGCATGGGATGATAAAGCCCCTCGTGGAAACTATTCTGCAATCTGGTACCGTGAGCCACTTGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGAAAATTGCTCCTGAAGACTTGATCAACATAGCAGGCCTTTCCCAGGTACCTGATGGTGTAGCTTCGTGGCATGTTGCAGTGAGCAAGTTCACAGATTCACCACTGCTTTCAGCAGCATTGCCAGTTTGGGATTCTTCTAATGAGACCATTATGGCTGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGTTAATGAGAGAGCTTGTTGAGATGCATAGTGGCCATATGTACTTGACTTCACAAGAGGGTTATTTGCTTGCAACTTCCACAAATGCGCCTCTTCTGGCAAATTCAACAAAGCCTAAGCTTAAGATGGCAGTTGACTGTGAAGACGATGTCATTCGACAGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCAAGTCACGAGATTCATGTAGAAAATGTCAAGCTAGGCCACCAGAGATATTATATTGACTCCTTCTTTCTAAATTTGAAGAGACTCCCTTTGGTTGGTGTGATTATCATACCAAGAAAGTATATCATGGGACAGGTTGATGAAAGAGCCTTCAAAACGCTGGTTATTCTAATATCTGCATCATTATGTATTTTAGTCATTGGGTGTGTTTGCATTCTGATATTGACAAACGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAGTCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAATTACAAGAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCTGATGACTGTCTCACAAATGAACAATATTCAACCGTGACTCAAATAAGAAAATGCTCAACTGCTCTGCTCCGTCTTCTTAACAACATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGGTCCTAGAAGATGCAGAATTTGATTTAGGAAGAGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTGGAGACTGTTCTAGACTTGTCTGATGATATGCCAAAGATAGTTCGGGGTGATTCTGCAAGGGTGGTTCAAATATTTGCAAATCTGATCAACAATTCAATCAAGTTTACTCCATCGGGTCATATTGTTCTGCGGGGATGGAGTGAAAGCCCAAATTCTTCCGTTGGAAGTCCAAATTCTCCTCTTGACCAGAAGAAATTATGGAGTTTACAGAAGTGCAGAGAGAAACCAAATGCAAATCATTCAAAAAAAACATCTATGAAAGACAACAAAGTAATACTTTGGTTTGAAGTTGAGGACACAGGCTGTGGTATTGATCCAAGCAAATGGGATTCCGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTAGACTGCATGGAGGCACTGGTCTTGGTCTTTGCATTGTCAGAAACTTGGTTAACAAGATGGGTGGGGACATCAAAGTAGTAAAAAAAGAGGGCGCAGGAACACTGATGCGATTATGCTTGCTTCTCAGTGCGCCCATGGATGTCACAGAACAACAGTGTGCAGTAGATTTGACAGACACTGGCTTAGTGGTACTGCTTGGATTACATGGCAACATGGGTAGATTAATTACATCGAAGTGGCTTCAGAAAAACGGGGTGTGCACAATGGAAGCATGTGACTGGAATGGACTAACTCAAATTTTGAGGGAACTATTTCATGCAAGAAGTTCAGTCCATAATACTGACTTTGATGCACACTATCCAGCAAAAGAGGAATTGAAGACTAAACTACTGAACATACGAGATATGAGGAACCCAGTTTTTGTGATTGTTGTTGACATTGGATTACTTGACTTGAGCACAGATATATGGAAGGAACAACTTAACTTCCTTCACAGGTACTTTGGTAGAGCAAAGTTTCTATGGATGCTGAATCATGACACTTCCAATAACGTAAAGATGGAGCTCCGAAGGAAAGGGCATTTATTGATGGTCAATAAACCCCTTTACAAGGGAAAAATGATACATATTTTGGAATCTGTTATGAAGGAGAGAAATTTTGAGCTACAAAAGAAAAACATGATTGTACCAAGGACCACAATGAAAGAGGGAGATTTGCATGAATTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGTTCCGATGATTCTGACATATCTGATATAGCTGGTTCTAATCCTGCTAGTGCTAATGGAGATAAACCAGTTGAGAAGGTAGAAAAATCTCATCTATCATCAGCATATCATATGAATAACTGCCTAGTTAGATTAACCAATGAAAATGACTATATGGAGGAAAATGATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCCCAAATCATGATTCTGCAGAACACCAACCTAAATCACTGTCCACCAAAGAATCACCATCCATTTCAACAGCAGATCAGGATGAAGATTCTGAATGTGGTGAAACACACAGGGTCACCAGTAAATCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAGGGTTGCAACTATAATGCTTGAGAAAATGGGAGCTGATGTAGTTGCTGTAGGTGATGGACAACAGGCAGTAGAAGCTCTCAATTGCATGTTCAATGCTGAAGATTGCAGAAGGGAATCACTCCAGAAAGATAGAAACACAAGATCTCAAACAGAGATTCTGTCTAGCCGTCCCTATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGGTATGAGGCAACAAAAGAAATCAGGAAATCAGAAGTGGGAACAAGCTTTCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCCTGTGATGAAGCCAAATGCTTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGATTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAACAACATCTTCAACACTCTCATAA 3789 0.4093 MLMACAGRGSLVMAENKDEAYSETSECSSALTMPMASRCRYLFHKLCGSTDSWNKSTTPKGRRLFHRDVEKEEFQYANSPCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYGLRYELLQRPVLRMWRILNATSEITTAQVKLSQYVIRRHSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDLSNYSMGVSNSKEANSVSTHQAWDDKAPRGNYSAIWYREPLDPVSGEKIGKAMKIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNETIMAVVGVTTALYSVGQLMRELVEMHSGHMYLTSQEGYLLATSTNAPLLANSTKPKLKMAVDCEDDVIRQGAEWLQRTYGNNFPPSHEIHVENVKLGHQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMNLRAELISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKIVRGDSARVVQIFANLINNSIKFTPSGHIVLRGWSESPNSSVGSPNSPLDQKKLWSLQKCREKPNANHSKKTSMKDNKVILWFEVEDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGAGTLMRLCLLLSAPMDVTEQQCAVDLTDTGLVVLLGLHGNMGRLITSKWLQKNGVCTMEACDWNGLTQILRELFHARSSVHNTDFDAHYPAKEELKTKLLNIRDMRNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRAKFLWMLNHDTSNNVKMELRRKGHLLMVNKPLYKGKMIHILESVMKERNFELQKKNMIVPRTTMKEGDLHEFLEIDSTHFDAASSDDSDISDIAGSNPASANGDKPVEKVEKSHLSSAYHMNNCLVRLTNENDYMEENDLRKEESSSPSPNHDSAEHQPKSLSTKESPSISTADQDEDSECGETHRVTSKSVDGKKSLEGLKILLAEDTPVLQRVATIMLEKMGADVVAVGDGQQAVEALNCMFNAEDCRRESLQKDRNTRSQTEILSSRPYDLILMDCQMPKMDGYEATKEIRKSEVGTSFHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKTTSSTLS 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01836 1262 ProSiteProfiles Response regulatory domain profile. 1109 1254 IPR001789 GO:0000160
Viun2g01836 1262 Pfam His Kinase A (phospho-acceptor) domain 517 582 IPR003661 GO:0000155|GO:0007165
Viun2g01836 1262 SUPERFAMILY CheY-like 1106 1254 IPR011006 -
Viun2g01836 1262 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 629 779 IPR003594 -
Viun2g01836 1262 Gene3D - 1087 1258 - -
Viun2g01836 1262 PANTHER TWO-COMPONENT HISTIDINE KINASE 77 786 - -
Viun2g01836 1262 SMART REC_2 1108 1250 IPR001789 GO:0000160
Viun2g01836 1262 MobiDBLite consensus disorder prediction 1058 1077 - -
Viun2g01836 1262 Gene3D - 504 583 - -
Viun2g01836 1262 Gene3D - 584 782 IPR036890 -
Viun2g01836 1262 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 504 583 IPR036097 GO:0000155|GO:0007165
Viun2g01836 1262 SMART HKATPase_4 629 781 IPR003594 -
Viun2g01836 1262 CDD REC_hyHK_CKI1_RcsC-like 1110 1250 - -
Viun2g01836 1262 SMART HisKA_10 516 582 IPR003661 GO:0000155|GO:0007165
Viun2g01836 1262 MobiDBLite consensus disorder prediction 1085 1100 - -
Viun2g01836 1262 FunFam Histidine kinase 1-like protein 504 583 - -
Viun2g01836 1262 MobiDBLite consensus disorder prediction 990 1022 - -
Viun2g01836 1262 ProSiteProfiles Histidine kinase domain profile. 523 781 IPR005467 -
Viun2g01836 1262 Pfam Response regulator receiver domain 1166 1249 IPR001789 GO:0000160
Viun2g01836 1262 PRINTS Bacterial sensor protein C-terminal signature 741 759 IPR004358 GO:0016310|GO:0016772
Viun2g01836 1262 PRINTS Bacterial sensor protein C-terminal signature 724 734 IPR004358 GO:0016310|GO:0016772
Viun2g01836 1262 PRINTS Bacterial sensor protein C-terminal signature 706 720 IPR004358 GO:0016310|GO:0016772
Viun2g01836 1262 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 571 777 IPR036890 -
Viun2g01836 1262 MobiDBLite consensus disorder prediction 1045 1100 - -
Viun2g01836 1262 CDD HisKA 517 578 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01836 Viun-Chr2 27344238 27350900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01836 34 1258 Histidine Kinase Gene Family AT2G17820 63.768 0.0 1566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Viun2g01836 HATPase_c 2.6e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01836 - - vra:106777758 2311.18