Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01802 ATGGAGTTTGTGCCAAATCCCTGTCCTTTGCGTTCATCTTCGCTCGGGAATCTCGTCGAGAGGGTTAAGCAGCTTGGTACCCTCGCCGTCTCTGCCGTCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGCACTTTGTTAGGGGCCTTGACTGGTGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGAGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCTTCTCTTGTTCTTTGGCAATCTGATGAATCTGGAATTGGTTGCGTGTTATATTTGATTGATGTTATCGCCAGCTTGCTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTTCAAAATCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTGCCAAAGGTTTATCTGGAGATTTGGTTGAAAAAATCCCAAAAATAAAAATTACAACAGACAACAATTTTGATGCATCCGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGGATTTTCAGCTTGGAGAAACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTTCCTTGCATAGATAAGTGGCTCTTCAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 699 0.4478 MEFVPNPCPLRSSSLGNLVERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQNQMGAVETSFDEVQNIFDTGGAKGLSGDLVEKIPKIKITTDNNFDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01802 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Viun2g01802 232 SMART ring_2 187 228 IPR001841 -
Viun2g01802 232 Pfam Ring finger domain 186 229 IPR001841 -
Viun2g01802 232 CDD RING-H2_NIPL1-like 186 229 - -
Viun2g01802 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
Viun2g01802 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 231 IPR044523 -
Viun2g01802 232 FunFam NEP1-interacting protein-like 1 147 232 - -
Viun2g01802 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Viun2g01802 232 SUPERFAMILY RING/U-box 186 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01802 Viun-Chr2 27181050 27183518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01802 17 232 C3H Transcription Factor Family AT5G66070 76.852 6.49e-119 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01802 - - gmx:100807641 433.721