Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01792 ATGGCCGATTCTCCGCCACGAAGGAATTCAAGGTCCCCTTCCCCTTGGAGGGCTCAGTCAAGATCGAGGTCAAGGTCTAGATCCAGGCCAAGGTCTAGGTCCCGGTCAAGATCATTTGAAAAACAAAGGCCAAGGTCTCGCTCCAGAAGTCGTGGAAGATCAAGATCAAGAAGTCCTGAAAGGACGGAGACTAAAAATACAGGGAATACACTTTATGTCACTGGCCTATCGTCAAGGGTCACTGAGAGAGACCTGGAGGAGCATTTCTCTAAAGAGGGAAAGGTTGCTTCGTGCTTTCTTGTGGTGGAGCCTCGTACTCGTATTTCTCGAGGTTTTGCTTTTATTACAATGGATACTGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCCCGAAGAAAGCGTGCAAGAACTCCTACACCTGGACACTATCTTGGCCTGAAAAGTACTCGAGACTATGGATATCGCGGTGACCGTGGAAGATATAGAGGAGGTGGCTCTGGTCGTGATGATTATGCATATCGTGGAGAGCGTGGAAGGTCTCCAAGGCGCTCACCTTATCGTGGTGGTAGAGATTATTCTCCGAGGCATTCACCGCCACCTTATGGCGGAAGAACTAGGAGGGATAGGTCCCGATCACTTCCATACTCTCCATATGGTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGTGA 738 0.4919 MADSPPRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSFEKQRPRSRSRSRGRSRSRSPERTETKNTGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSGRDDYAYRGERGRSPRRSPYRGGRDYSPRHSPPPYGGRTRRDRSRSLPYSPYGSPDRRYARGSR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01792 245 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g01792 245 SUPERFAMILY RNA-binding domain, RBD 65 179 IPR035979 GO:0003676
Viun2g01792 245 CDD RRM_SF 71 143 - -
Viun2g01792 245 SMART rrm1_1 70 143 IPR000504 GO:0003723
Viun2g01792 245 MobiDBLite consensus disorder prediction 1 75 - -
Viun2g01792 245 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 153 - -
Viun2g01792 245 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 55 230 - -
Viun2g01792 245 MobiDBLite consensus disorder prediction 145 245 - -
Viun2g01792 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Viun2g01792 245 Gene3D - 8 153 IPR012677 -
Viun2g01792 245 MobiDBLite consensus disorder prediction 166 205 - -
Viun2g01792 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01792 Viun-Chr2 27090784 27093759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01792 67 154 Eukaryotic Initiation Factors Gene Family AT1G49760 30.682 1.32e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01792 K12897 - gmx:100527350 332.028