Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01783 ATGGTGATCGAGCATGACATTGAGAGCTGCGGGAGCAGAGCGGTGCAGTTGTCGCATGCTAACCACCCTCGACACCACCGCCAGAAACTGGAGGTGTACAATGAGGTGTTGCGGCGGATTCAGGATTCCGATTGCGAGGAGGCGCACGTTCCCGGCTTCGATGATCAGCTATGGCTACACTTCAATCGACTTCCTGCTAGGTACGCGTTGGATGTAAATGTTGAGAGGGCAGAAGATGTTTTGGCTCATAAAAGATTGCTCAAGTTGGCGGAGGATCCCGCATCTCGACCTGCATTTCAAGTTCGGTTAGTACAGGTATATCCTTTTGGTGGTGCAAATTATACTGATTCCACACATTCAGATCCTTCTGAAATAGAGGATGCACAGAGTTCTCTTAACTATTCTTTAAAGCAGGGAATTCATCCACCACCCACATTTGGTTCATCCTCTAATCTTGAAGCTCTTGCTCTTCAAACAACCAAAAATAACATTGAAGATGGGGGAAGTGCTATGAGTGTAACACCATATTTTCACAGGCCCATGCACGAGATTACCTTTTCAACAGTTGACAAGCCTAAACTCCTTAGTCAGTTAACATCAATACTTGGTGAGATGGGACTGAATATTCAAGAAGCTCATGCATTCTCCACTACTGATGGATTTTCTCTGGATGTCTTTGTTGTTGAGGGATGGCCCAATGAGGAAACTGAGGAGCTGAAAGGTGTGTTAGAAAAGGAAATTTACAAGGAGCAGAATATGTCAAATCAGGGCATACATTGTGCTGCCAATGATCATTACCAGCCAAGGATAGAGCAATCCCCTCACTGCATTCAAATACCAACGGATGGAGCTGATGTCTGGGAACTTGATACCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAAGATGTTGCTATCAAAGTTCTCAAGCCTGAGCGCATAAGTACAGATATGCTGAAGGAGTTTGCACAAGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATCGGCGCATGTACCAGGCCCCCGAATCTTTGTATTGTTACGGAGTTTATGTCTAGGGGAAGCTTATATGACTTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCTTTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTAAAGGTTGCTGATTTTGGGGTTGCTAGAGTGCAAACTCAGTCTGGTGTGATGACAGCTGAAACTGGAACATACCGTTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCAGATGTTTTCAGTTTTGGAATAGCTCTCTGGGAGCTTTTAACTGGAGAACTACCCTACTCTTGCTTGACCCCATTACAAGCAGCAGTCGGCGTTGTGCAGAAGGGCCTAAGGCCTACAATTCCAAAAACAACACACCCAAGACTTTCTGAACTGCTACAGCGCTGCTGGCAACAAGATCCGACTCTCAGACCAGATTTCTCTGAAATAATAGAAATTCTTCAGCACATAGCAAAAGAGGTCAATGATCACAAGGATAAATCATCATCCCATGGCTTTCTCTCAGCTCTTAGACGGGTCCATCACTGA 1716 0.4411 MVIEHDIESCGSRAVQLSHANHPRHHRQKLEVYNEVLRRIQDSDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLKLAEDPASRPAFQVRLVQVYPFGGANYTDSTHSDPSEIEDAQSSLNYSLKQGIHPPPTFGSSSNLEALALQTTKNNIEDGGSAMSVTPYFHRPMHEITFSTVDKPKLLSQLTSILGEMGLNIQEAHAFSTTDGFSLDVFVVEGWPNEETEELKGVLEKEIYKEQNMSNQGIHCAANDHYQPRIEQSPHCIQIPTDGADVWELDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSCLTPLQAAVGVVQKGLRPTIPKTTHPRLSELLQRCWQQDPTLRPDFSEIIEILQHIAKEVNDHKDKSSSHGFLSALRRVHH 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01783 571 FunFam serine/threonine-protein kinase HT1 373 564 - -
Viun2g01783 571 ProSitePatterns Protein kinases ATP-binding region signature. 300 321 IPR017441 GO:0005524
Viun2g01783 571 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 158 551 - -
Viun2g01783 571 SUPERFAMILY ACT-like 181 247 IPR045865 -
Viun2g01783 571 PRINTS Tyrosine kinase catalytic domain signature 368 381 IPR001245 GO:0004672|GO:0006468
Viun2g01783 571 PRINTS Tyrosine kinase catalytic domain signature 514 536 IPR001245 GO:0004672|GO:0006468
Viun2g01783 571 PRINTS Tyrosine kinase catalytic domain signature 405 423 IPR001245 GO:0004672|GO:0006468
Viun2g01783 571 PRINTS Tyrosine kinase catalytic domain signature 451 461 IPR001245 GO:0004672|GO:0006468
Viun2g01783 571 PRINTS Tyrosine kinase catalytic domain signature 470 492 IPR001245 GO:0004672|GO:0006468
Viun2g01783 571 ProSiteProfiles ACT domain profile. 183 256 IPR002912 -
Viun2g01783 571 ProSiteProfiles Protein kinase domain profile. 294 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01783 571 SUPERFAMILY Protein kinase-like (PK-like) 273 543 IPR011009 -
Viun2g01783 571 Gene3D Transferase(Phosphotransferase) domain 1 373 566 - -
Viun2g01783 571 CDD ACT_TyrKc 181 247 - -
Viun2g01783 571 CDD STKc_MAP3K-like 300 543 - -
Viun2g01783 571 SMART serkin_6 294 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01783 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Viun2g01783 571 Gene3D Phosphorylase Kinase; domain 1 284 372 - -
Viun2g01783 571 Pfam Protein tyrosine and serine/threonine kinase 294 543 IPR001245 GO:0004672|GO:0006468
Viun2g01783 571 FunFam Serine/threonine-protein kinase isoform 1 284 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01783 Viun-Chr2 27046503 27055751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01783 2 570 MAP Kinase Kinase Kinase AT4G35780 69.965 0.0 805
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Viun2g01783 PK_Tyr_Ser-Thr 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01783 - - gmx:100816767 1093.95