Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01761 ATGGATAATGGTAATGAAGGGGAAGAAGCAGTGCAGAAGATAAGAATAATGTTAGTGTGTGGTAATGGGAAGGGTTCAAGAAGAGGGTCATCATCATCATCATCATCATCTTCTAGTTTTTGTCAAGCAGATGAATGTGATGTGAACTTGAACATGGCAAAGAGTTACAACCGCCGACACAAGGTTTGTGAGAGACATTCTAAGGCTCCTGTTGTTTTAGTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTAGCAAGTTCCATGAACTTGCAGAATTTGATGAGACCAAAAGAAGTTGCAGGAAAACATTGGCTGAGCATAATGAACGTAGAAGAAAAACTCGCACAGAAATGTCCTTAGGAGATGATTAA 375 0.4 MDNGNEGEEAVQKIRIMLVCGNGKGSRRGSSSSSSSSSSFCQADECDVNLNMAKSYNRRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHELAEFDETKRSCRKTLAEHNERRRKTRTEMSLGDD 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01761 124 Pfam SBP domain 41 114 IPR004333 GO:0003677
Viun2g01761 124 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 117 IPR044817 GO:0003677
Viun2g01761 124 MobiDBLite consensus disorder prediction 23 42 - -
Viun2g01761 124 SUPERFAMILY SBT domain 40 118 IPR036893 GO:0003677|GO:0005634
Viun2g01761 124 Gene3D - 31 102 IPR036893 GO:0003677|GO:0005634
Viun2g01761 124 ProSiteProfiles Zinc finger SBP-type profile. 38 115 IPR004333 GO:0003677
Viun2g01761 124 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01761 Viun-Chr2 26924125 26925620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01761 31 114 SBP-box Gene Family AT3G15270 63.095 3.67e-34 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Viun2g01761 SBP 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01761 - - vra:106776693 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01761 2 26924125 26925620 Viun2g01761 2 26924125 26925620 ECH