Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun2g01753 | ATGGTTATATCAGATGAGAACAGATCTAAACCAGTGAACCCCACTAGTTTTCAAGGAGGGATGAATCATGGGGGAAACAGAAAGGTGGGGCAGAACAGAAGGGCGTTGAGCGTGATCAATCAGGATCTGGTGGCCGAAGGAAGACCTTACCCTTGTGTTGTTAACAAGAGAACATTGGCAGAAAAACAAGATATGTGTGAGAAGAAGCAGGCGGATCCGGGGCATCGACCCATCACAAGGAGGTTTGCTGCACAGATTGCTAGCACACAGCAAAATCGTGTTGAGGGAACCAAGAAGTCAAACTTGGGAAATTCAAATTCAAATGGATTTGGAGAGGTTATATTTGTTGATGATGAACTCAAGCCAACGGATGACCAACCAGTGCCAATGTCTTTAGAACAGACAGAGCCAGTGCATAATGAAGTAGATCAGATGGAGGAAGTTGAGATGGAGGATATAATTGATGAGACAGTTTTGGACATTGATATATGTGACGCAAATAATCCCCTTGCAGTGGTGGATTATATTGAAGATCTTTACACCTACTACAGAAAAATGGAGGGTTCTAGTTGTGTCTCACCCAATTACATGACACAGCAATTTGACATTAATGAAAGGATGAGGGCTATACTCATTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTAACTGTTAATCTTATAGACAGATTTCTGGCAAAGCAGACAGTGGTAAGAAAGAAACTTCAGTTGGTTGGACTAGTTGCAATGCTTCTGGCATGCAAGTATGAAGAAGTTTCAGTTCCTGTGGTGGGGGATCTAATTCTCATATCAGACAAAGCATACACAAGAAAGGAGGTTCTGGATATGGAGAAGTTGATGGTCAACACATTGCAGTTTAACATGTCTGTGCCAACAGCATATGTTTTTATGAAAAGATTCCTAAAGGCTGCTCAAGCAGACAGAAAGCTTGAGCTACTTGCTTTCTTCCTGGTAGAGCTATCTCTAGTGGAATATGAGATGCTGAAGTTCCCTCCATCATTGTTAGCAGCAGCTGCTGTTTACACAGCACAATGCTCCATTTATGGCTTCAAACAATGGAGTAAAACATGTGAATGGCACTCCAATTACTCAGAAGATCAGCTATTAGAGTGCTCTACATCAATGGTTGATTTTCATCAGAAGGCTGGGAATGGGAAACTTACTGGGGTACATAGAAAGTACTGTTCATCTAAATTTAACTACACTGCAAAATGTGAACCCGCACGTTTTCTTGTGGAGAACTCGTTGTAG | 1296 | 0.419 | MVISDENRSKPVNPTSFQGGMNHGGNRKVGQNRRALSVINQDLVAEGRPYPCVVNKRTLAEKQDMCEKKQADPGHRPITRRFAAQIASTQQNRVEGTKKSNLGNSNSNGFGEVIFVDDELKPTDDQPVPMSLEQTEPVHNEVDQMEEVEMEDIIDETVLDIDICDANNPLAVVDYIEDLYTYYRKMEGSSCVSPNYMTQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLAKQTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLDMEKLMVNTLQFNMSVPTAYVFMKRFLKAAQADRKLELLAFFLVELSLVEYEMLKFPPSLLAAAAVYTAQCSIYGFKQWSKTCEWHSNYSEDQLLECSTSMVDFHQKAGNGKLTGVHRKYCSSKFNYTAKCEPARFLVENSL | 431 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun2g01753 | 431 | SMART | Cyclin_C_2 | 306 | 423 | IPR004367 | - | |
| Viun2g01753 | 431 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Viun2g01753 | 431 | CDD | CYCLIN_AtCycB-like_rpt2 | 306 | 422 | - | - | |
| Viun2g01753 | 431 | SUPERFAMILY | Cyclin-like | 305 | 423 | IPR036915 | - | |
| Viun2g01753 | 431 | FunFam | G2/mitotic-specific cyclin-1 | 290 | 418 | - | - | |
| Viun2g01753 | 431 | PIRSF | Cyclin_A_B_D_E | 6 | 431 | IPR046965 | GO:0016538|GO:0044772 | |
| Viun2g01753 | 431 | SUPERFAMILY | Cyclin-like | 167 | 303 | IPR036915 | - | |
| Viun2g01753 | 431 | Gene3D | - | 192 | 304 | - | - | |
| Viun2g01753 | 431 | Gene3D | - | 178 | 418 | - | - | |
| Viun2g01753 | 431 | ProSitePatterns | Cyclins signature. | 208 | 239 | IPR006671 | - | |
| Viun2g01753 | 431 | SMART | cyclin_7 | 310 | 392 | IPR013763 | - | |
| Viun2g01753 | 431 | SMART | cyclin_7 | 213 | 297 | IPR013763 | - | |
| Viun2g01753 | 431 | Pfam | Cyclin, N-terminal domain | 178 | 304 | IPR006671 | - | |
| Viun2g01753 | 431 | Coils | Coil | 428 | 431 | - | - | |
| Viun2g01753 | 431 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Viun2g01753 | 431 | CDD | CYCLIN_AtCycB-like_rpt1 | 156 | 301 | - | - | |
| Viun2g01753 | 431 | PANTHER | CYCLINS | 133 | 396 | IPR039361 | - | |
| Viun2g01753 | 431 | Pfam | Cyclin, C-terminal domain | 306 | 421 | IPR004367 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun2g01753 | Viun-Chr2 | 26864218 | 26867138 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun2g01753 | 1 | 427 | Core Cell Cycle Gene Families | AT1G20610 | 58.986 | 3.01e-177 | 500 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun2g01753 | K21777 | - | gmx:100798068 | 776.548 |