Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01750 ATGGGAGGTGACGCAGCAACAACAGCTGAGAGTGCCACATCGGAGTCGAACGCCGCCGAGGTCAACATCAACATTCGTTGCTCCAATGGCTCAAAGTTTTCTGTTCAGATTAGTCTGGATTCCGTGGTCAGATCTTTCAAGGACGTTGTGGCTGGCAGCTGTGACATCCCCGCCGATCAACAACGGCTGATTTACAAGGGTCGGATCCTCAAGGATGATCAAACCCTCCAAAGCTACGGTTTGGAGGCTGATCACACTGTACATTTGGTTCGTGGCTTTGCTCCTAACAACAACACTGGTGGGACTAATAGTGGCGGTGCCAATACCACAACAGCAAATACCACGAGAGGTGCTGGTGCTAATGAGGGTGGGGGTTTAGGAGGGCCAGGATTTGGGGCTTCACTCTTTCCTGGACTTGGTGGTAACAATGCGATGGGAGGCAGTGGCCTCAATGGCTTATTTGGAGCGGGCTTTCCAGACCTTGAACAAATGCAGCAACCGTTTTTGTCAAACCCCAATTTAGTGAGAGATATAATGAACACACCTGCTATGCAGAATTTAATAAATAATCCGGAGATAGTGCGGAATCTTATAATGAATAATCCTCAGATGCAAGAGTTAATGGATAGAAACCCTGAGCTGGCGCACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACAAGGAACCCTGAGATCATGCGCGAAATGATGAGGAATACAGACAGAGCAATGAGCAACATCGAATCTTCTCCTGAGGGATTTAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGTAATGCCGGAAATGATGGTGCAGCGGCTAGGAACCAAGCAACTAATCCCTCAACTGCTAATTCTGAAGCAACTTCCCCTGTACCCAATACGAACCCACTTCCTAATCCATGGTCAGCTCCTGGAACTGGAGGTGGCCAAAATAACACCAGAAGGTCAACTACTGCTGGTGGGGATGCTCGACAGCAGCCACCCACTGGCTTAGGAGGGCTTGGACTGCCTGATCTTGAAGGCATGATGGGTGGAATGCCGGATGCTGCTATGTTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCACAGACTATGAATCAGATTCTTGGGGTCAATTCTGAGCAGCGTGGCATGCCTGATATAAATTCTCTAAGGGAGGTTATGCAAAACCCAGAGTTTTTACGACTGTTTTCCTCACCCGAGACACTGCAGCAACTCTTGTCTTTCCAGCAAGCTCTTCTGTCTCAGATTGGTCAGCAACAATCAACACAGGAACCAGGTCAAACAGGAGGAGGCACTGCACCGTTGAACAACATGGGACTGGAGATGTTATCGAGCATGTTCGGTGGACTTGGAGCTGGTAGCCTTGCTGTTCCTAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCTCAGCTTCAAGAGATGGGATTCTTTGATACACAAGAGAACATAAGGGCTCTTATTGCCACATCAGGGAACGTTCATGCAGCAGTTGAGCGGCTTTTGGGGAACTCTGGACAGTAG 1617 0.4787 MGGDAATTAESATSESNAAEVNINIRCSNGSKFSVQISLDSVVRSFKDVVAGSCDIPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFAPNNNTGGTNSGGANTTTANTTRGAGANEGGGLGGPGFGASLFPGLGGNNAMGGSGLNGLFGAGFPDLEQMQQPFLSNPNLVRDIMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNAGNDGAAARNQATNPSTANSEATSPVPNTNPLPNPWSAPGTGGGQNNTRRSTTAGGDARQQPPTGLGGLGLPDLEGMMGGMPDAAMLTQLMQNPAISQMMQSILSNPQTMNQILGVNSEQRGMPDINSLREVMQNPEFLRLFSSPETLQQLLSFQQALLSQIGQQQSTQEPGQTGGGTAPLNNMGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01750 538 Gene3D - 8 105 - -
Viun2g01750 538 MobiDBLite consensus disorder prediction 276 308 - -
Viun2g01750 538 SUPERFAMILY Ubiquitin-like 13 105 IPR029071 -
Viun2g01750 538 Pfam UBA/TS-N domain 496 532 IPR015940 -
Viun2g01750 538 MobiDBLite consensus disorder prediction 444 461 - -
Viun2g01750 538 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Viun2g01750 538 MobiDBLite consensus disorder prediction 96 121 - -
Viun2g01750 538 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Viun2g01750 538 SMART ubq_7 21 92 IPR000626 GO:0005515
Viun2g01750 538 Gene3D - 196 254 - -
Viun2g01750 538 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 490 535 IPR015940 -
Viun2g01750 538 PANTHER UBIQUILIN 17 533 IPR015496 -
Viun2g01750 538 SMART CBM 201 240 IPR006636 -
Viun2g01750 538 SMART CBM 147 188 IPR006636 -
Viun2g01750 538 SMART CBM 397 432 IPR006636 -
Viun2g01750 538 SMART CBM 352 394 IPR006636 -
Viun2g01750 538 FunFam Ubiquitin domain-containing protein DSK2b 479 537 - -
Viun2g01750 538 SUPERFAMILY UBA-like 492 534 IPR009060 GO:0005515
Viun2g01750 538 MobiDBLite consensus disorder prediction 316 340 - -
Viun2g01750 538 FunFam Ubiquitin domain-containing protein DSK2b 198 254 - -
Viun2g01750 538 CDD UBA_PLICs 496 534 - -
Viun2g01750 538 SMART uba_6 496 534 IPR015940 -
Viun2g01750 538 MobiDBLite consensus disorder prediction 96 118 - -
Viun2g01750 538 MobiDBLite consensus disorder prediction 276 354 - -
Viun2g01750 538 CDD Ubl_Dsk2p_like 21 93 - -
Viun2g01750 538 Gene3D - 478 538 - -
Viun2g01750 538 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Viun2g01750 538 MobiDBLite consensus disorder prediction 444 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01750 Viun-Chr2 26834433 26841419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01750 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 30.000 4.79e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01750 K04523 - gmx:100797539 861.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01750 2 26834433 26841419 Viun2g01750 2 26834433 26841419 ECH