Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01743 ATGGGTCTCTGCTTTGCTTCCCTCGCTCCTCGCCAAACACCTTCTAATTCTCTTCACGGTTCTGGTTCAGAACGTGAAGGCGAAGGTGTTAGTGGAGGAAGCAGTAACAGTAACAGTGGAAACAACGTTGTGTTTCCGAGTGTGGAAACGAGGAACTTGAAGCAGTTCAATTTTGCAGAACTGAAAGCTGCAACGAAGAGTTTCAGATCTGATGCATTGCTTGGAGAAGGGGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATGAGAAGACACTGACACCAACCAAAGCTGGATCTGGAATGGTGGTTGCGGTTAAGAAATTGAACTCCGAGAGTGTGCAGGGATTTCGAGAATGGCAGTCAGAAATCAATTTCTTAGGAAGAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGTTGTGACGATGTGGAATTTCTACTTGTGTACGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAACACTAGCACAGAACCACTGTCTTGGGACACCAGACTCAAAATAGCTATTGGTGCAGCTAGAGGCTTGGCTTTCTTACACACTTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCAAATATATTACTTGATGAGGATTTCAATGCAAAGATTTCAGATTTTGGCTTGGCCAAATTAGGGCCTTCTGGGGGAGTTTCACATGTGACTACCAGGATCATGGGCACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGACACTTGTATGTGAAGAGTGATGTTTATGGTTTTGGTGTAGTGCTGCTTGAAATTCTGACAGGGTTGCGGGCACTTGATAGAAACAGGCCCTTGGAGCAGCAGAATCTAATTGAATGGGCTAAGCCTTCTCTGTCTGATAAAAGAAAGTTGAAAAGCATAATGGATGAGAGAATAGAGGGTCAGTATTCAAGCAAGGCAGCAATGAAAGCAGCACAATTAACTCTAAAATGCCTTGAACGTGACCGTAAAAAACGTCCTCCCATGAAAGATGTTCTGGAAACATTGGAACGCATACAAGTTATAAAGGATAAAAGGAAATAA 1086 0.43 MGLCFASLAPRQTPSNSLHGSGSEREGEGVSGGSSNSNSGNNVVFPSVETRNLKQFNFAELKAATKSFRSDALLGEGGFGKVYKGWLHEKTLTPTKAGSGMVVAVKKLNSESVQGFREWQSEINFLGRVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTSTEPLSWDTRLKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDFNAKISDFGLAKLGPSGGVSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLRALDRNRPLEQQNLIEWAKPSLSDKRKLKSIMDERIEGQYSSKAAMKAAQLTLKCLERDRKKRPPMKDVLETLERIQVIKDKRK 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01743 361 FunFam Serine/threonine-protein kinase BIK1 35 153 - -
Viun2g01743 361 MobiDBLite consensus disorder prediction 1 43 - -
Viun2g01743 361 CDD STKc_IRAK 74 353 - -
Viun2g01743 361 Gene3D Phosphorylase Kinase; domain 1 41 153 - -
Viun2g01743 361 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g01743 361 Gene3D Transferase(Phosphotransferase) domain 1 154 361 - -
Viun2g01743 361 SUPERFAMILY Protein kinase-like (PK-like) 42 354 IPR011009 -
Viun2g01743 361 MobiDBLite consensus disorder prediction 9 43 - -
Viun2g01743 361 PANTHER OS01G0588500 PROTEIN-RELATED 40 354 - -
Viun2g01743 361 FunFam Serine/threonine-protein kinase PBS1 154 361 - -
Viun2g01743 361 ProSitePatterns Protein kinases ATP-binding region signature. 74 107 IPR017441 GO:0005524
Viun2g01743 361 Pfam Protein tyrosine and serine/threonine kinase 72 350 IPR001245 GO:0004672|GO:0006468
Viun2g01743 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01743 Viun-Chr2 26781163 26784351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01743 4 350 Glycoside Hydrolase AT3G07070 45.278 2.94e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun2g01743 PK_Tyr_Ser-Thr 9.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01743 - - gmx:100777578 613.609